Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I19
         (1022 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    24   3.4  
AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective spe...    26   4.7  
AC006666-4|AAK21415.1|  109|Caenorhabditis elegans Hypothetical ...    29   5.3  
AC006611-4|AAK85456.2|  328|Caenorhabditis elegans Hypothetical ...    29   7.1  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    24   7.5  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    24   7.6  
AL110485-18|CAB60366.1|  108|Caenorhabditis elegans Hypothetical...    28   9.3  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    28   9.3  

>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 24.2 bits (50), Expect(2) = 3.4
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 586 PPXPFFXXXXXXXXXPPPPPP 524
           PP P           PPPPPP
Sbjct: 523 PPMPGMAPLSTGAPTPPPPPP 543



 Score = 23.8 bits (49), Expect(2) = 3.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 541 PPPPPPP 521
           PPPPPPP
Sbjct: 579 PPPPPPP 585


>AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective
           spermatogenesis protein 8 protein.
          Length = 512

 Score = 25.8 bits (54), Expect(2) = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 541 PPPPPPPK 518
           PPPPPPPK
Sbjct: 70  PPPPPPPK 77



 Score = 21.8 bits (44), Expect(2) = 4.7
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -2

Query: 583 PXPFFXXXXXXXXXPPPPPP 524
           P P           PPPPPP
Sbjct: 57  PTPLTPAITPCEAPPPPPPP 76


>AC006666-4|AAK21415.1|  109|Caenorhabditis elegans Hypothetical
           protein H31G24.1 protein.
          Length = 109

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 586 PPXPFFXXXXXXXXXPPPPPPPK 518
           PP P+          PPPPPPP+
Sbjct: 71  PPQPYAQSPIAAVPPPPPPPPPQ 93


>AC006611-4|AAK85456.2|  328|Caenorhabditis elegans Hypothetical
           protein C30F8.3 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 586 PPXPFFXXXXXXXXXPPPPPPP 521
           PP P +         PPPPPPP
Sbjct: 58  PPPPAYPFAPQVFTQPPPPPPP 79


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 23.8 bits (49), Expect(2) = 7.5
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 586 PPXPFFXXXXXXXXXPPPPPP 524
           PP P           PPPPPP
Sbjct: 298 PPPPLPLSNPPAKPTPPPPPP 318



 Score = 23.0 bits (47), Expect(2) = 7.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 538 PPPPPPK 518
           PPPPPPK
Sbjct: 313 PPPPPPK 319


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 23.8 bits (49), Expect(2) = 7.6
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 586 PPXPFFXXXXXXXXXPPPPPP 524
           PP P           PPPPPP
Sbjct: 76  PPPPLPLSNPPAKPTPPPPPP 96



 Score = 23.0 bits (47), Expect(2) = 7.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 538 PPPPPPK 518
           PPPPPPK
Sbjct: 91  PPPPPPK 97


>AL110485-18|CAB60366.1|  108|Caenorhabditis elegans Hypothetical
           protein Y46G5A.23 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 456 GGGGKKKKXXXXKKKXXXXXXLGGGGGGGXXXXXXXXKKXGXG 584
           GGGG   +    ++       LGGGGGGG        +  G G
Sbjct: 43  GGGGDSCEDGGEQQVVLIGQVLGGGGGGGGRRHHRGHRHGGGG 85


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 586 PPXPFFXXXXXXXXXPPPPPPP 521
           PP P           PPPPPPP
Sbjct: 72  PPPPLISILQQAPPPPPPPPPP 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,919,398
Number of Sequences: 27780
Number of extensions: 178746
Number of successful extensions: 2549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2699257404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)