Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I18
         (893 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    46   0.002
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    46   0.002
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    35   2.4  
UniRef50_Q8ILQ0 Cluster: Spliceosome-associated protein, putativ...    33   7.4  

>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 26/41 (63%), Positives = 26/41 (63%)
 Frame = +3

Query: 474 SXSXPTDXLXXVXRLRXAVSPXPKAVXRLSXESGDXAGKXM 596
           S S  TD L  V RLR AVS   KAV RLS ESGD AGK M
Sbjct: 19  SASSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 23/43 (53%), Positives = 23/43 (53%)
 Frame = -3

Query: 618 PFXGLLLTCXFLRYPXILXITVLPPXGXXIPLAATEXPXXXXQ 490
           P    LLTC F  YP IL ITVLPP     PLAA E P    Q
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +2

Query: 416 SALMNRPTPGXRXXXXWAXFXFXAH 490
           +ALMNRPT G R    WA F F AH
Sbjct: 25  AALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q8ILQ0 Cluster: Spliceosome-associated protein, putative;
           n=6; Plasmodium|Rep: Spliceosome-associated protein,
           putative - Plasmodium falciparum (isolate 3D7)
          Length = 484

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +2

Query: 719 PDRTIKIPGXFPPXXXPXXPPXSNPAXFPXXLSRPFPLXXRVXXXPXXPPXVP 877
           P+    +P  FPP   P  PP + P  FP  L   FP        P  PP +P
Sbjct: 394 PNLPPNLPPNFPPTLPPNFPP-TLPPNFPPTLPPNFPPGFPPNLPPNFPPTLP 445


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,559,605
Number of Sequences: 1657284
Number of extensions: 4569209
Number of successful extensions: 15908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13858
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)