Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I18
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0135 + 1042889-1044255,1045368-1045809                           31   1.2  
11_01_0133 + 1121392-1122731,1123417-1123858                           31   1.2  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   5.0  
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646...    29   6.6  

>12_01_0135 + 1042889-1044255,1045368-1045809
          Length = 602

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 767 PXXPPXSNPAXFPXXLSRPFPLXXRVXXXPXXPPXVPXLR 886
           P  PP S+PA  P   + P P    V   P  PP  P  R
Sbjct: 136 PPPPPPSHPALLPPDATAPPPPPTSVAALPPPPPAQPDKR 175


>11_01_0133 + 1121392-1122731,1123417-1123858
          Length = 593

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 767 PXXPPXSNPAXFPXXLSRPFPLXXRVXXXPXXPPXVPXLR 886
           P  PP S+PA  P   + P P    V   P  PP  P  R
Sbjct: 135 PPPPPPSHPALLPPDATAPPPPPTSVAALPPPPPPQPDKR 174


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +2

Query: 737 IPGXFPPXXXPXXPPXSNPAXFPXXLSRP-FPLXXRVXXXPXXPPXVP 877
           +P  F P   P  PP + P  FP     P FP        P  PP  P
Sbjct: 280 LPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPP 327


>04_03_0660 +
           18463011-18463322,18463424-18463516,18464500-18464607,
           18464892-18465044,18465256-18465354,18465443-18465571,
           18465987-18466166,18466208-18466246,18466247-18466363,
           18466445-18466609
          Length = 464

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 718 PRPHYKNTRPFPPXXXPPXPPXFQP 792
           P P  ++  P PP   PP PP  QP
Sbjct: 38  PPPPARHRAPSPPRPPPPPPPPTQP 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,031
Number of Sequences: 37544
Number of extensions: 155058
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)