SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I18
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    30   1.8  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    29   3.1  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    29   4.2  

>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = +2

Query: 731 IKIPGXFPPXXXPXXPPXSNPAXFPXXLSRPFPLXXRVXXXPXXPPXVPXLR 886
           IK+P   PP   P  P    P+  P     P P        P  PP  P ++
Sbjct: 97  IKLPPVQPPTYKPPTPTVKPPSVQPPTYKPPTPTVKPPTTSPVKPPTTPPVQ 148


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +2

Query: 752 PPXXXPXXPPXSNPAXFPXXLSRPFPLXXRVXXXPXXPPXVP 877
           PP   P  PP S P   P     P P   ++   P  PP  P
Sbjct: 64  PPPPPPCPPPPSPPPCPPPPSPPPSPPPPQLPPPPQLPPPAP 105


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +2

Query: 752 PPXXXPXXPPXSNPAXFPXXLSRPFPLXXRVXXXPXXPPXVP 877
           PP   P  PP S P   P  +S P P        P  PP  P
Sbjct: 96  PPPQPPQSPPASAPTVSPPPVSPP-PAPTSPPPTPASPPPAP 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,225,694
Number of Sequences: 28952
Number of extensions: 109762
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -