BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP04_F_I18 (893 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 30 1.8 At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 29 3.1 At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 4.2 >At5g14920.1 68418.m01750 gibberellin-regulated family protein similar to SP|P46689 Gibberellin-regulated protein 1 precursor {Arabidopsis thaliana}; contains Pfam profile PF02704: Gibberellin regulated protein Length = 275 Score = 30.3 bits (65), Expect = 1.8 Identities = 15/52 (28%), Positives = 19/52 (36%) Frame = +2 Query: 731 IKIPGXFPPXXXPXXPPXSNPAXFPXXLSRPFPLXXRVXXXPXXPPXVPXLR 886 IK+P PP P P P+ P P P P PP P ++ Sbjct: 97 IKLPPVQPPTYKPPTPTVKPPSVQPPTYKPPTPTVKPPTTSPVKPPTTPPVQ 148 >At1g49750.1 68414.m05579 leucine-rich repeat family protein contains leucine-rich repeats, Pfam:PF00560 Length = 494 Score = 29.5 bits (63), Expect = 3.1 Identities = 14/42 (33%), Positives = 16/42 (38%) Frame = +2 Query: 752 PPXXXPXXPPXSNPAXFPXXLSRPFPLXXRVXXXPXXPPXVP 877 PP P PP S P P P P ++ P PP P Sbjct: 64 PPPPPPCPPPPSPPPCPPPPSPPPSPPPPQLPPPPQLPPPAP 105 >At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19) non-consensus splice site at the intron:exon boundary (AT:exon) Length = 247 Score = 29.1 bits (62), Expect = 4.2 Identities = 15/42 (35%), Positives = 16/42 (38%) Frame = +2 Query: 752 PPXXXPXXPPXSNPAXFPXXLSRPFPLXXRVXXXPXXPPXVP 877 PP P PP S P P +S P P P PP P Sbjct: 96 PPPQPPQSPPASAPTVSPPPVSPP-PAPTSPPPTPASPPPAP 136 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,225,694 Number of Sequences: 28952 Number of extensions: 109762 Number of successful extensions: 655 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 291 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 580 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2100696768 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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