Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_I17
(1017 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.009
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 36 0.009
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.028
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.085
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.085
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.26
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.60
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 4.2
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.9 bits (79), Expect = 0.009
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +1
Query: 646 P*APAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLP 783
P P PP P P P PP P PP P PPLP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 29.5 bits (63), Expect = 0.79
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +1
Query: 658 APPXRPXPXPXXP-FPPGPPXXPXXXXXYP--PRXPPXXXLPPLPP 786
APP P P P PP P P P P PP PP P
Sbjct: 435 APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +1
Query: 646 P*APAPPXRPXPXPXXPF-PPGPPXXPXXXXXYPPRXPPXXXLPPLPP 786
P AP P P P P P P P PP PPLPP
Sbjct: 425 PSAP-PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Frame = +1
Query: 652 APAPPXRPXPXP-XXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLP 783
APA P P P P P G P P P P P P
Sbjct: 443 APAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 646 P*APAPPXRPXPXPXXP 696
P APAPP P P P P
Sbjct: 471 PAAPAPPPAPAPAPAAP 487
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 35.9 bits (79), Expect = 0.009
Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 652 APAPPXRPXPXPXXPFPP--GPPXXPXXXXXYPPRXPPXXXLPPLPP 786
AP PP P P P PP G P P PP PP LPP P
Sbjct: 491 APLPPTTFAP-PGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMP 536
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.028
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +1
Query: 652 APAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPP 759
APAP P P P PP PP P PP PP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 652 APAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPP 759
AP P P P P PP PP PP PP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 655 PAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPP--XXXLPPLPP 786
P PP P P P PP P PP PP PP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 655 PAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLPPXXV 795
PAP P P P P GPP P PP PP PP V
Sbjct: 744 PAPAPIPVPPPA-PIMGGPPPPPPPPGVAGAGPPP----PPPPPPAV 785
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.085
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 785 GGKGGRXXXGGXRGGYXXXXXGXXGGPGGKGXXG 684
G GG GG GG+ G GGPGG G G
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 785 GGKGGRXXXGGXRGGYXXXXXGXXGGPGGKG 693
GG GG G GG+ G GGPGG G
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241
Score = 31.5 bits (68), Expect = 0.20
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 785 GGKGGRXXXGGXRGGYXXXXXGXXGGPGGKG 693
G +GG GG GG+ G GGPGG G
Sbjct: 232 GFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262
Score = 30.7 bits (66), Expect = 0.34
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 776 GGRXXXGGXRGGYXXXXXGXXGGPGGKG 693
GG GG GG+ G GGPGG G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 770 RXXXGGXRGGYXXXXXGXXGGPGGKGXXG 684
R GG GG+ G GPGG G G
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFG 211
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.085
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +1
Query: 652 APAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLP 783
AP P P P P G P P PP P +PP+P
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
Score = 31.9 bits (69), Expect = 0.15
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Frame = +1
Query: 640 AXP*APAP----PXRPXPX--PXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLP 783
A P PAP P P P P P P G P P PP P +PP+P
Sbjct: 1062 APPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP 1115
Score = 31.5 bits (68), Expect = 0.20
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +1
Query: 625 PXXLXAXP*APAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLPP 786
P A P PAP P P P P PP P PP P +PP+PP
Sbjct: 1143 PKPSVAAPPVPAPSGAP-PVPK-PSVAAPPV-PAPSSGIPPVPKPAAGVPPVPP 1193
Score = 31.5 bits (68), Expect = 0.20
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = +1
Query: 625 PXXLXAXP*APAPPXR--PXPXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLPP 786
P A P PAP P P P PP PP PP P +PP+PP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA-----PPVPKPSVGVPPVPP 1212
Score = 30.3 bits (65), Expect = 0.45
Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Frame = +1
Query: 625 PXXLXAXP*APAP---PXRPXPX---PXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLPP 786
P A P PAP P P P P P P G P P PP P PP+P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP-VPAPSGAPPVPK 1163
Query: 787 XXV 795
V
Sbjct: 1164 PSV 1166
Score = 28.7 bits (61), Expect = 1.4
Identities = 29/128 (22%), Positives = 31/128 (24%), Gaps = 6/128 (4%)
Frame = +1
Query: 652 APAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLPPXXVXXXXXXXXXXXX 831
AP P P P P G P P PP P PP+P V
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP-VPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Query: 832 XXXXXXXXXXXXXXXSXXPPXSALXRXGXXXFPXPXPG------XLGFSPXPPXXXXPPP 993
S P G P P +G P PP PP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219
Query: 994 XXPXFXXP 1017
P P
Sbjct: 1220 PTPSAGLP 1227
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Frame = +1
Query: 655 PAPPXR---PXPXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLP 783
P PP P P P PP PP PP P LPP+P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTA-----PPVPTPSAGLPPVP 1230
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +1
Query: 652 APAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLP 783
AP P P P P P P PP P PP+P
Sbjct: 1197 APPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.1 bits (67), Expect = 0.26
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 785 GGKGGRXXXGGXRGGYXXXXXGXXGGPGGKGXXG 684
G +GGR G RGG+ G GG GG G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGG 39
Score = 29.9 bits (64), Expect = 0.60
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 785 GGKGGRXXXGGXRGGYXXXXXGXXGGPGG 699
G +GGR GG RGG G G GG
Sbjct: 42 GARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -2
Query: 785 GGKGGRXXXGGXRGGYXXXXXGXXGGPGGKGXXG 684
G +GGR G RGG+ G GG G G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 785 GGKGGRXXXGGXRGG-YXXXXXGXXGGPGGKG 693
G GGR GG RGG G GG GG+G
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGGRG 51
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 785 GGKGGRXXXGGXRGGYXXXXXGXXGGPGG 699
GG+GG G RGG G GG GG
Sbjct: 38 GGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 785 GGKGGRXXXGGXRGGYXXXXXGXXGGPGGKG 693
GG+GG GG RGG G G GG+G
Sbjct: 30 GGRGGAR--GGGRGGARGGRGGRGGARGGRG 58
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 776 GGRXXXGGXRGGYXXXXXGXXGGPGGKG 693
GGR G RGG G G GG+G
Sbjct: 38 GGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.60
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +1
Query: 652 APAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPP-XXXLPPLPP 786
A APP P P P PP P PP P +PP+PP
Sbjct: 155 ASAPPI-PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Score = 29.5 bits (63), Expect = 0.79
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Frame = +1
Query: 640 AXP*APAPPX-----RPXPXPXXPFPPGPPXXPXXXXXYPPRXPP-XXXLPP 777
A P APAPP RP P P P PP P P + PP LPP
Sbjct: 123 APPSAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Frame = +1
Query: 655 PAPPXRPXPX-PXXPF--PPGPPXXPXXXXXYPPRXPPXXXLPPL 780
P P P P P P PP P P PP+ PP PPL
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP----PPL 206
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 692 PPFPRXPPPXRXLXXXTPPXXPPXXXSPPCP 784
PP P PPP P PP S P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.4
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Frame = +1
Query: 661 PPXRPX----PXPXXPFPPGPPXXPXXXXXYPPRX--PPXXXLPPLP 783
PP RP P P PP PP PP PP PPLP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = +1
Query: 640 AXP*APAPPXRPXPXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPPLP 783
A P + P P P P PP P P PP P P +P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 927 SSSPPRVVGXFPTPPXXPXXXPPAPXLP 1010
S++PP++ PTPP P PP P P
Sbjct: 1696 SAAPPQMSA--PTPPPPPMSVPPPPSAP 1721
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +1
Query: 625 PXXLXAXP*APAPPXRPXPXPXXPFPPGPPXXP 723
P + A P P P P P P GPP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 26.6 bits (56), Expect = 5.6
Identities = 16/55 (29%), Positives = 21/55 (38%)
Frame = +3
Query: 852 RATAXVSPFXXSPXFRPXPXXXXXFSSSPPRVVGXFPTPPXXPXXXPPAPXLPXP 1016
R + P +P P P S+PP G P+ P P AP +P P
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP-PSAPPPPLPASSAPSVPNP 1746
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.2
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +1
Query: 700 PPG-PPXXPXXXXXYPPRXPPXXXLPPLPPXXV 795
PPG PP P PP PP PP PP V
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP----PPPPPGYV 33
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +1
Query: 646 P*APAPPXRPX--PXPXXPFPPGPPXXPXXXXXYPPRXPPXXXLPP 777
P P PP P P P PP P P P PP LPP
Sbjct: 662 PSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVPP---LPP 704
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = -2
Query: 782 GKGGRXXX----GGXRGGYXXXXXGXXGGPGGKGXXG 684
G+GGR GG RGG+ G GG G +G G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGG-GSRGGFG 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,954
Number of Sequences: 5004
Number of extensions: 18670
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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