Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_I16
(916 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi... 69 6e-12
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi... 66 3e-11
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil... 66 3e-11
At1g51720.1 68414.m05828 glutamate dehydrogenase, putative simil... 40 0.002
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p... 29 3.2
At5g37110.1 68418.m04454 hypothetical protein 29 4.3
At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138... 28 7.5
At2g21300.1 68415.m02535 kinesin motor family protein contains P... 28 9.9
>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
thaliana] SWISS-PROT:Q38946
Length = 411
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/70 (42%), Positives = 44/70 (62%)
Frame = +2
Query: 557 LEIQFPLRRDSGDYEMILGYRAQXSTHRTPXKGGIRFSXDVTRDEVKALSXLMTFKCACV 736
++++ + +D G +G+R Q R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLVSYIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 737 DVPFGGAKXG 766
D+P+GGAK G
Sbjct: 95 DIPYGGAKGG 104
>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +2
Query: 557 LEIQFPLRRDSGDYEMILGYRAQXSTHRTPXKGGIRFSXDVTRDEVKALSXLMTFKCACV 736
++++ + +D G +G+R Q R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 737 DVPFGGAKXG 766
+P+GGAK G
Sbjct: 95 KIPYGGAKGG 104
>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +2
Query: 557 LEIQFPLRRDSGDYEMILGYRAQXSTHRTPXKGGIRFSXDVTRDEVKALSXLMTFKCACV 736
++++ + +D G +G+R Q R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVA 94
Query: 737 DVPFGGAKXG 766
+P+GGAK G
Sbjct: 95 KIPYGGAKGG 104
>At1g51720.1 68414.m05828 glutamate dehydrogenase, putative similar
to NADP-specific glutatamate dehydrogenase (NADP-GDH)
SP:P28724 [Giardia lamblia (Giardia intestinalis)]
Length = 637
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/79 (30%), Positives = 36/79 (45%)
Frame = +2
Query: 530 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQXSTHRTPXKGGIRFSXDVTRDEVKALSX 709
+L+EP + ++ + P D G+ + G+R Q + P +GGIRF + K L
Sbjct: 238 RLLEP-ERMIVFRVPWIDDRGETHVNRGFRVQFNQALGPCRGGIRFHPSMNLSIAKFLGF 296
Query: 710 LMTFKCACVDVPFGGAKXG 766
T K A GGA G
Sbjct: 297 QQTLKNALSPYKLGGASGG 315
>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
protein (GI:507127) [Streptococcus pyogenes]
Length = 509
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +2
Query: 434 HRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMILG 613
HR+ VV++ + ++K + + K + I + E + + RR++ DYE LG
Sbjct: 422 HRSYAVVDEMVTREVKKDPAVRQVYKLLTSIHSIFEQISEKILMTDRFRRETVDYEKKLG 481
>At5g37110.1 68418.m04454 hypothetical protein
Length = 1307
Score = 29.1 bits (62), Expect = 4.3
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 353 SHEIPDKLKDIPTSANPKFFHMV-EYFFHRACQVVEDK--LVEDLKSRTPIEEKKKKVAG 523
S EIPDKLKD P+ F ++ E H C VV K +E+ K RT +KK
Sbjct: 532 SAEIPDKLKD------PELFEVIKESMVHGPCGVVNPKCPCMENGKRRTDDFVEKKDFKC 585
Query: 524 ILKLMEPCDHILEIQF 571
+ + P + L +++
Sbjct: 586 DNRYVIPYNRSLSLRY 601
>At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.; expression supported by MPSS
Length = 590
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 505 EKESSRYSKTYGTMRSHS*DSISSEARFWRLRNDIRLSRTXFHTQDSXQ 651
EK+ +Y+ TYG M S + D+++ R R N + T+D Q
Sbjct: 118 EKQKMKYNGTYGRMLSLATDALAEGMRDNRYCNGFDFEQNKLETKDLWQ 166
>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
profile: kinesin motor domain PF00225
Length = 862
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 680 LRPLRIEYLLXLESCVWNXVRDSLISFRNRQNRASEEIESQECDRM 543
LRPL + +L E+ W + D+ + +RN S + DR+
Sbjct: 31 LRPLNEKEILANEAADWECINDTTVLYRNTLREGSTFPSAYSFDRV 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,797,091
Number of Sequences: 28952
Number of extensions: 320778
Number of successful extensions: 657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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