Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I11
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184...   155   6e-38
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332...   119   3e-27
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     49   4e-06
07_01_0479 + 3606663-3607448                                           37   0.024
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    34   0.17 
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    29   4.8  

>05_03_0462 -
           14316486-14316602,14316689-14316793,14318406-14318486,
           14318593-14318610
          Length = 106

 Score =  155 bits (375), Expect = 6e-38
 Identities = 74/90 (82%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
 Frame = +3

Query: 210 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 386
           FSTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVP+T   
Sbjct: 16  FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 75

Query: 387 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 476
                 VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 76  KKKALPVNKDRFISKMFLRGDSVIIVLRNP 105


>01_07_0305 -
           42631214-42631330,42631423-42631527,42633208-42633216,
           42635198-42636142,42636349-42636450,42637210-42637302
          Length = 456

 Score =  119 bits (286), Expect = 3e-27
 Identities = 56/79 (70%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
 Frame = +3

Query: 243 SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDK 419
           S   + +VLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTEVP+T         VNKD+
Sbjct: 377 SCLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDR 436

Query: 420 FISKMFLRGDSVILVLRNP 476
           FISKMFLRGDSVI+VL+NP
Sbjct: 437 FISKMFLRGDSVIIVLKNP 455


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 29/89 (32%), Positives = 51/89 (57%)
 Frame = +3

Query: 222 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 401
           PL ++  S+  + ++ +  R++++L G++ A+D+H NM+L +V+E+ T V          
Sbjct: 19  PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEI 76

Query: 402 AVNKDKFISKMFLRGDSVILVLRNPLATA 488
                + I  +F+RGD VILV   PL TA
Sbjct: 77  VRTTKRTIPFLFVRGDGVILV-SPPLRTA 104


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 17/68 (25%), Positives = 39/68 (57%)
 Frame = +3

Query: 255 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 434
           N ++ +  ++ ++L+G+  AFDRH N+VL + +E + ++P +          + + +  +
Sbjct: 14  NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSKTTGEREERRTLGLL 72

Query: 435 FLRGDSVI 458
            LRG+ V+
Sbjct: 73  LLRGEEVV 80


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
 Frame = +3

Query: 213 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 392
           ST    ++TQ +K   Q+ +  + + ++ GR+  FD + N+VL++ +E+           
Sbjct: 3   STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51

Query: 393 XXXAVNKD--KFISKMFLRGDSVILVLRNPLATAA 491
               V KD  K + ++ L+GD++ L++   +   A
Sbjct: 52  ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 258 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 356
           +++ +  + +K+L+G +  FD + NMVLE+V E
Sbjct: 90  SKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,021,290
Number of Sequences: 37544
Number of extensions: 316208
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)