Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I09
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   2.6  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   4.5  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    26   7.8  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 489 RLYNNLXPNSPLRYHVYYHVIELAARV 569
           RLY+ +   + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 141 QVEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDD 287
           ++ +GIK +G ++  +I+ +DQA     YF S   E  E  +    E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 188 VHKHSWPLHFNSFFDLYSFIYYLKA 114
           +H H+ PL   +FF  YS   +LKA
Sbjct: 352 LHYHNKPLEHKAFFQKYSSKRFLKA 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,549
Number of Sequences: 5004
Number of extensions: 48517
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)