Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I09
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    28   8.4  

>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 858

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
 Frame = +3

Query: 204 QALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMV 383
           +A E+R + K  GA++ EE S   ++D+L +I+  C  CFKE  ++++E+++NSI+S+++
Sbjct: 49  KAQEIRTFLKEQGADLKEE-SITPLQDELAEILECCQVCFKE--DAELESVMNSILSLVL 105

Query: 384 SIPLERGENLILAFSQRLTKAPGPKLGMVA---LQSLWRLYNNLXPNSPLRYHVYYHVIE 554
            +P +R E LI     +L           A   L+ L  L++ L    P+R+ VY   + 
Sbjct: 106 VVPEKRNE-LIKKCCDKLKANMSEDENSSAAARLRVLSVLFSGLPEKDPMRHEVYCTQLT 164

Query: 555 LAARVGFV 578
           +AA+   V
Sbjct: 165 IAAKASLV 172


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 195  LEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVS 374
            L+D   ELR    SLGA +        +E  L ++ G+C+    E  +   E + N  V 
Sbjct: 2972 LDDMITELRNAEISLGASLMGTPDLDQLESQLEEVKGLCED--MEGKQELFENLKNKGVD 3029

Query: 375  IMVSIPLE 398
            +M  IP E
Sbjct: 3030 MMEKIPEE 3037


>SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 392 WYRNHNRDNTVQNGFDVRFTRLFETSITNPNDLMQII-LNAL 270
           WY    R N V+NGFD+     +  ++T+P     ++ LN++
Sbjct: 72  WY-GRRRQNCVRNGFDITVLTRYSEAVTHPRTYRALLSLNSV 112


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 321  FKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYN 500
            FKE  ++ I ++   IV + V +  E+G  L     + +            + S  RL+ 
Sbjct: 1307 FKESGKASIPSVNREIVRVWVDLCSEKGVPLEREAEEMIRLLDESLKHRSRIDSTMRLWM 1366

Query: 501  NLXPNSPLRYHV 536
             + P+ P+  HV
Sbjct: 1367 KIAPHVPVEIHV 1378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,300,658
Number of Sequences: 59808
Number of extensions: 360068
Number of successful extensions: 808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)