Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I06
         (1191 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF286472-1|AAG00551.1|  567|Homo sapiens retinitis pigmentosa GT...    43   0.002

>AF286472-1|AAG00551.1|  567|Homo sapiens retinitis pigmentosa GTPase
            regulator protein.
          Length = 567

 Score = 43.2 bits (97), Expect = 0.002
 Identities = 63/295 (21%), Positives = 89/295 (30%), Gaps = 3/295 (1%)
 Frame = +3

Query: 243  GXXEXEXXKGGXKXXXKXERKXRRXXXXXKKRXRXEXXEKEXGGXEXEGGXXXXEEEXXE 422
            G  E E    G K   + E   +R     +++ R +  +KE      EGG     E   E
Sbjct: 97   GRGEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEE 156

Query: 423  XXXK--XRXXXXEGXEGXEXREXXXXRGAXXGKXXXXXXXXXKXXXGERGXRXRGXGXXX 596
               +        EG E  E  E    R    G+         +    E G +  G     
Sbjct: 157  EGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEET 216

Query: 597  EXGXXQXKXGGRXEXEXXXXXXGXGGXXXKGEXXXXEXEXG-GKRXXGXXXGKAXXXXXX 773
            E    + + GG  E E      G G    + E    E E G G+   G    +       
Sbjct: 217  EGRGEEKEEGG--EVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGE 274

Query: 774  XQGREXEXQHXXXXXXQKEAGXXXXXXXGXERGXXXGSXKXXKXRXXRXXXGXEKXRXXE 953
             +G E E +       + E         G E G   G  +  +        G  +    E
Sbjct: 275  EEGEEGEGEE-EGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGE 333

Query: 954  XXRXXRKTKKEGXERXXXXXEXEXXGKERDAPEXXXETQREXEXXVRTXGEXEXE 1118
                  K ++EG E      E E  G+  D      E + E E      GE E E
Sbjct: 334  G-----KGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGE-EEEGEGEGE 382


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.308    0.138    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,697,308
Number of Sequences: 237096
Number of extensions: 420586
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16734053920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)