Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I05
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           29   3.8  
07_03_0039 - 12718972-12720699                                         29   5.0  
06_03_0267 + 18970578-18972464                                         29   5.0  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 863 LGAKGPXTRXWEXXXXXXMRKXHXXRRGKGGQVSGXRRGRNRXXHEGAXRG 711
           LG +   +  W       +R+    RRG GG+V+G    R+R    GA  G
Sbjct: 222 LGRRCSRSPWWRRRGEARVRRR--GRRGGGGEVNGEEAARSRRRRRGAWEG 270


>07_03_0039 - 12718972-12720699
          Length = 575

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 589 YGF-WPFXGLLXTXSFLRYPPDXVDNRITAFE 497
           +GF W   GLL     LR PPD + +R+ + E
Sbjct: 141 FGFPWSRLGLLFPTVLLRLPPDLITSRLASLE 172


>06_03_0267 + 18970578-18972464
          Length = 628

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 660 SVDFCDARXGGRRPMEKRQQRGLFTGSGLLXAF 562
           S DFC A  GG+R +  +   GL  GSG    F
Sbjct: 486 STDFCKAHGGGKRCLWGQSGSGLGDGSGTCERF 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,087,879
Number of Sequences: 37544
Number of extensions: 250458
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)