Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_I04
(866 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 36 0.043
SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11) 30 2.8
SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 29 3.7
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_22939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 8.6
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 35.9 bits (79), Expect = 0.043
Identities = 22/75 (29%), Positives = 39/75 (52%)
Frame = -2
Query: 313 ILRLNYYSVYILCSNLKVVDLVQVPLLIDIENFLRNIHECSSSRSSDRVF*CFFGSSAGS 134
++R++Y+S + L S+ ++ L++VP + +F I C S S D F +GSS+ S
Sbjct: 3418 LIRVSYFSYWYLISHTGILFLLRVPYFSSVSSF-HTIRVCHFS-SRDLPFQVLYGSSSSS 3475
Query: 133 KFXPEATAEAIKPKT 89
F + I K+
Sbjct: 3476 TFGMNVDDQGIPFKS 3490
>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 415 LKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFT--AVFPSISDLQLSNAEVFSYV-H 585
+ LA P FK K+ V ++ YG + FT A+ P L+ NAE V
Sbjct: 326 IPLAYPGQYFKVLMKSSSAHVVKSLIKSTYGYVVFTAGAILPVEGPLKSVNAECLLMVEQ 385
Query: 586 EINPKF 603
E+NP F
Sbjct: 386 EVNPDF 391
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 225 LRIS*EIFTNAVQVEVRTGSFDVFLGHRPDPSSLQKQQQKRSNPKLKGTGTVQTT 61
++IS + + ++ S D F+G P + K ++ S+PK K + T +TT
Sbjct: 124 MKISDVLTSTTIETSPPPESADFFIGENGKPPFMSKGPERISSPKRKSSFTDETT 178
>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1191
Score = 29.9 bits (64), Expect = 2.8
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 262 PLNYYRVYIPNSNLTVEYHDVK-TRG-FDTIKIIEFYINSKTEKLVLAAEVQSLKLASPK 435
P NYY +Y P S T YHD K T G FD + + +K +V +A +L
Sbjct: 1076 PFNYYGLYTP-SMPTKLYHDPKQTPGQFDI-----YNLPNKFTSVVQSALGMNLASMFYD 1129
Query: 436 TIFKYNRKAKEPIVRS 483
T+F Y ++ K+ RS
Sbjct: 1130 TLFDYGKELKDARARS 1145
>SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)
Length = 502
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 301 LTVEYHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASPK 435
+T + V ++ + EF+ SK EK++LA + +LKL PK
Sbjct: 11 ITTNFLSVFSKTHEVEWSTEFFQRSKNEKVLLALQEDTLKLKCPK 55
>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1055
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -1
Query: 566 SALLNCRSLMLGNTAVNVSVP*STSNASLLTIGSLAFLLYLKIVFGEANFKDCTSAANTS 387
S LLN + VN SN TI L FLL+ + +NF DC+ A+ +
Sbjct: 665 STLLNPSVTTFASPKVNFFTDVLLSNIVFFTICVLCFLLFNPVSLIFSNFMDCSQLADNN 724
>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2496
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -1
Query: 743 VLYITGH*NSSWRFKYFLKTNRDVFSSXPN*LCVSESRL 627
VL + G+ N ++ YF+ T+ +++S N LC++ +R+
Sbjct: 76 VLSLNGYSNPQFQVFYFVLTSTSLYASLNNLLCLTSNRM 114
>SB_22939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 397 AAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVD 501
A E K+A+ K + +YNRKAKE + R E +
Sbjct: 21 AKEKDPRKVAAGKKLAEYNRKAKEALAREMKREAE 55
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 629 LNDRRGPKMNFGLISWT*LKTSALLNCR--SLMLGNTAVNVSVP*STSNASLLTIGSLAF 456
+ DR+G +N+ I+W AL R S ML N + + S + S SL F
Sbjct: 55 VGDRKGSDLNYYAITWVEAMLYALNEIRHNSSMLQNYTLGFDIRDSCNKVSTALEASLDF 114
Query: 455 LL 450
LL
Sbjct: 115 LL 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,156,008
Number of Sequences: 59808
Number of extensions: 413326
Number of successful extensions: 1042
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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