Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I04
         (866 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07950.1 68416.m00972 rhomboid protein-related contains 6 tra...    31   0.75 
At1g20530.1 68414.m02558 hypothetical protein                          29   3.0  
At5g37180.1 68418.m04464 sucrose synthase, putative / sucrose-UD...    29   5.3  
At1g26720.1 68414.m03254 expressed protein ; expression supporte...    29   5.3  
At5g52290.1 68418.m06489 hypothetical protein                          28   7.0  
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa...    28   7.0  
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR...    28   7.0  
At5g61250.2 68418.m07684 glycosyl hydrolase family 79 N-terminal...    28   9.3  
At5g61250.1 68418.m07683 glycosyl hydrolase family 79 N-terminal...    28   9.3  
At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger) fa...    28   9.3  

>At3g07950.1 68416.m00972 rhomboid protein-related contains 6
           transmembrane domains; similar to phosphatidyl inositol
           glycan class T (GI:14456615) [Homo sapiens]
          Length = 304

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 229 QLVRGPVPDPLPLNYYRVYIPNSNLTVEYHDVKTRG 336
           +L+R PV DP+ L ++R+    SN T E HD  T G
Sbjct: 222 ELLR-PVIDPIALIFHRMLCGRSNATSEDHDYSTSG 256


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
 Frame = +1

Query: 205 YFSRNSQCQLVRGPVPDPLPLNY---YRVYIPNSNL--TVEYHDVKTRGF------DTIK 351
           ++SR  +   +  P P P P NY   +  +  +  L  T + +D+K R        D +K
Sbjct: 129 FYSRRYESGTITPPPPPPAPSNYAWDFINFFESYELPYTTDVNDLKDRETTPSHEEDKLK 188

Query: 352 IIEFYINSKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEV 498
             +  ++   EK+ +  E ++L++ S K   +  +++K+  V SD  EV
Sbjct: 189 KKKITVSQNDEKIKVEEEKKTLRI-SEKNRKRAPKESKDQKVSSDLSEV 236


>At5g37180.1 68418.m04464 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative similar to sucrose
           synthase GI:6682841 from [Citrus unshiu]
          Length = 836

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
 Frame = +1

Query: 484 DALEVDYGTLTFTAVFPSISD-----LQLSNAEVFSYVHEINPKFILGPLLSFSLDSETQ 648
           +ALEVD+G L FT  + S+S      L   ++++   +++ NP+ ++  LLS     E +
Sbjct: 129 NALEVDFGALDFTLPWLSLSSSIGNGLSFVSSKLGGRLND-NPQSLVDYLLSLEHQGE-K 186

Query: 649 SQLGXLLNTSR 681
             +   LNT+R
Sbjct: 187 LMMNETLNTAR 197


>At1g26720.1 68414.m03254 expressed protein ; expression supported
           by MPSS
          Length = 169

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 500 STSNASLLTIGSLAFLLYLKIVFGEANFKD 411
           +T   +LL IGS  FLL   I FG  N +D
Sbjct: 2   TTPTYNLLCIGSFMFLLCFSIGFGRKNLQD 31


>At5g52290.1 68418.m06489 hypothetical protein
          Length = 1569

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = +1

Query: 247 VPDPLPLNYYRVYIPNSNLTVEYHDVKTRGFDTI--KIIEFYINSKTEKLVLAAEVQSLK 420
           VPD + ++Y    I +S+L V Y D K  G D I  K     I  +T +L    + + +K
Sbjct: 75  VPDRVSVDYRVFEIDDSSLGVYYSDEKDDG-DAIADKATPKIIELETPEL----DFEMVK 129

Query: 421 LASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAV 528
                 I + ++  +E I   D +  DY T   T+V
Sbjct: 130 YEGSDIILQNSKDIQEQIYSVDYIPSDYFTENNTSV 165


>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 376

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 181 FDLNCIREYFSRNSQCQLVRGPVPDP 258
           F LNCI  +   NS C L RG +  P
Sbjct: 166 FHLNCIDTWLQSNSTCPLCRGTLFSP 191


>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1215

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -2

Query: 274 SNLKVVDLVQVPLLIDIENFLRNIHECSSSR 182
           +NLK+++L  +  L+++ +F+ N+H+ S  R
Sbjct: 865 TNLKILNLGYLSCLVELPSFIGNLHKLSELR 895


>At5g61250.2 68418.m07684 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           GI:8918740 from [Scutellaria baicalensis]
          Length = 539

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 48  YFFKMWFEQCLCLSVLGLIASAVASGXNLDPADDPKKHQKTL 173
           +F + W+ + L LS  G++        NL P +DPK   K L
Sbjct: 243 FFEEQWYSELLRLSGPGVLDVLTHHIYNLGPGNDPKLVNKIL 284


>At5g61250.1 68418.m07683 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           GI:8918740 from [Scutellaria baicalensis]
          Length = 539

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 48  YFFKMWFEQCLCLSVLGLIASAVASGXNLDPADDPKKHQKTL 173
           +F + W+ + L LS  G++        NL P +DPK   K L
Sbjct: 243 FFEEQWYSELLRLSGPGVLDVLTHHIYNLGPGNDPKLVNKIL 284


>At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 227

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 178 NFDLNCIREYFSRNSQCQLVRGPVPDP 258
           +F ++CI  +F   S C L R PV  P
Sbjct: 130 SFHVDCIDTWFRSRSTCPLCRAPVQPP 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,956,043
Number of Sequences: 28952
Number of extensions: 307359
Number of successful extensions: 754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)