Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I03
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    28   1.9  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   5.9  

>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 541 DDICDRLRLRNTTGLDEEVNNVQSLVAXVVAWKFPLQTII 660
           ++ICD L    +   + +VN+V+ + A +  WK  L + +
Sbjct: 458 NEICDSLYWNPSPSFESQVNSVRRIYARLELWKSDLHSSV 497


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 315 NCFQCSSTCSXPVKVRVSKSNIKRDKEYLL 226
           NC   S TC    + RV K N+ +D  +++
Sbjct: 30  NCVVYSETCKYNKRKRVKKPNVDKDDPHIV 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,447
Number of Sequences: 5004
Number of extensions: 47019
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)