Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I03
         (854 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)                 51   1e-06
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               29   4.8  

>SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)
          Length = 446

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
 Frame = +1

Query: 442 PGLFMYMMCTSISSLAVQSMHLEKACRVNYNYGDDICDRLRLRNTTGLDEEVNNVQSLVA 621
           P LF+YM CT +SS  +Q +   K C+ +YN     C+     N +    E N VQ+  +
Sbjct: 14  PVLFLYMFCTFMSSPLLQQLAYRKICKEHYN--TSACN-----NLSDYQNEQNYVQTSTS 66

Query: 622 XVVAWKFPLQTIIPAI-MVIFVGAXSDKYXKRKICIVFPFIGXILSNTGLLFATYYF 789
             + ++  L   +P+I   + +GA SD+   RK  ++ P +G IL N   +   ++F
Sbjct: 67  NWMRYQ-ALALALPSIASSLVLGAWSDRVG-RKAIMILPPVGNILMNINYMLNVHFF 121


>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 307  KTILASMS*PIRIHCSPEPPAEH 375
            K +L S   PI +HCSP+P   H
Sbjct: 1135 KLVLKSNRSPISVHCSPKPSRRH 1157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,567,890
Number of Sequences: 59808
Number of extensions: 342088
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)