Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I03
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    44   2e-04
AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical ...    33   0.34 
AL110500-2|CAB60427.2|  281|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
 Frame = +1

Query: 448 LFMYMMCTSISSLAVQSMHLEKACRVNYNYGDDICDRLRLRNTTGLDEEVNNVQSLVAXV 627
           LF+YM+ + ++    Q++  EK C + Y   +  C     RN +   ++  ++Q+  A  
Sbjct: 14  LFLYMLGSYLNYPVFQNLIYEKECLIKYQQNETFC-----RNVSAYYDD-KDIQA-AANH 66

Query: 628 VAWKFPLQTIIPAIM-VIFVGAXSDKYXKRKICIVFPFIGXILSNTGLLFATYY 786
             +   L  + P+++  + +GA +D Y   KI ++ P+IG IL     +F +Y+
Sbjct: 67  FYFISSLTLLCPSLVTTLLLGAATD-YWSIKIPLIIPYIGCILGTINYVFQSYF 119


>AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical
           protein Y43F8A.5 protein.
          Length = 475

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 25/113 (22%), Positives = 50/113 (44%)
 Frame = +1

Query: 448 LFMYMMCTSISSLAVQSMHLEKACRVNYNYGDDICDRLRLRNTTGLDEEVNNVQSLVAXV 627
           +F+Y + +S+     QS+   KAC +  +   +     + + T   D  V+++ S++   
Sbjct: 7   IFLYALTSSVFFPVFQSLIFYKAC-ITLSNSTEPEIACKSKETYARDNSVHSMSSVILMA 65

Query: 628 VAWKFPLQTIIPAIMVIFVGAXSDKYXKRKICIVFPFIGXILSNTGLLFATYY 786
            +    +     +    +VG  SD    RK+  + PFIG  +S+  +L    Y
Sbjct: 66  SSTGLCVSAFFTSR---WVGHLSD-VKSRKLAFLIPFIGLFISDFTILIQVLY 114


>AL110500-2|CAB60427.2|  281|Caenorhabditis elegans Hypothetical
           protein Y87G2A.2 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 441 PWPFYVHDVHFYFKSGGTKYAP 506
           P  FYVH VH YF  GG +  P
Sbjct: 47  PEGFYVHAVHCYFIRGGEESIP 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,524,028
Number of Sequences: 27780
Number of extensions: 273629
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)