Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I03
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66530.1 68414.m07559 arginyl-tRNA synthetase, putative / arg...    33   0.32 
At3g14900.1 68416.m01884 expressed protein                             31   0.74 
At1g60610.2 68414.m06823 expressed protein                             29   3.0  
At1g60610.1 68414.m06822 expressed protein                             29   3.0  

>At1g66530.1 68414.m07559 arginyl-tRNA synthetase, putative /
           arginine--tRNA ligase, putative similar to SP|P37880
           Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA
           ligase) (ArgRS) {Cricetulus longicaudatus}; contains
           Pfam profiles PF00750: arginyl-tRNA synthetase, PF03485:
           arginyl-tRNA synthetase N-terminal domain
          Length = 590

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 422 KYVFYLFQNYFRFFSPCSAGGSGEQCIRI 336
           KY++YL + + +F+S C   GS E+  R+
Sbjct: 537 KYLYYLSEEFTKFYSNCQVNGSAEETSRL 565


>At3g14900.1 68416.m01884 expressed protein
          Length = 611

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 509 SRCILCTARLEIEVHIMYIKRPGFYCRFSKYVFYLFQNYFRFFSPCSAGG 360
           SR ++C         I+Y+K+P F CRF     + F +   + +P +  G
Sbjct: 280 SRSLICQCAAWFRPDIVYVKKPVFQCRFEPQEDF-FNSLIPYLNPVTESG 328


>At1g60610.2 68414.m06823 expressed protein
          Length = 340

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 439 NPGLFMYMMCTSISSLAVQSMHLEKACR---VNYNYGDDICDRLRLRNTTGLDEEVNNV 606
           N   F Y   TS++ L +    +   C    VNY   D++   +RL +T G + E NN+
Sbjct: 16  NDSQFRYQSNTSLNQLHLLGT-MRAGCTIDPVNYFANDNLAPMMRLNSTRGRETENNNI 73


>At1g60610.1 68414.m06822 expressed protein
          Length = 340

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 439 NPGLFMYMMCTSISSLAVQSMHLEKACR---VNYNYGDDICDRLRLRNTTGLDEEVNNV 606
           N   F Y   TS++ L +    +   C    VNY   D++   +RL +T G + E NN+
Sbjct: 16  NDSQFRYQSNTSLNQLHLLGT-MRAGCTIDPVNYFANDNLAPMMRLNSTRGRETENNNI 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,339,496
Number of Sequences: 28952
Number of extensions: 244732
Number of successful extensions: 423
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)