Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I02
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0303 - 22939513-22939598,22940065-22940194,22940753-22941073     31   1.6  
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145...    29   3.6  
03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047     29   6.3  
05_04_0204 - 19022329-19023990                                         28   8.3  

>03_05_0303 - 22939513-22939598,22940065-22940194,22940753-22941073
          Length = 178

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 178 QGLPLVPW*RPAARSHHEALRLTPRPSRPGGREPAXLKNAGVQXAXIKXAREGAGXG 8
           +G    PW R A+ S+H  ++  PR +  G R  A  + +G +   +  A  GAG G
Sbjct: 19  RGASTAPWRRAASASYHHTIQALPRET-AGPRAAARERRSG-RVPAVLLALAGAGPG 73


>02_01_0223 +
           1453478-1453750,1455788-1456018,1456066-1456200,
           1457918-1457971,1458417-1458482,1458593-1458679,
           1459338-1459394,1459470-1459500,1459577-1459634,
           1459710-1459761,1459881-1459917,1460008-1460210,
           1460556-1460633,1460683-1460853,1461126-1461239
          Length = 548

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 634 HLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARG 518
           H HH G   D A   EV  D V +      A G+V+ RG
Sbjct: 24  HHHHDGAAGDSAAAAEVPQDKVVAAAAAAAAAGNVQRRG 62


>03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047
          Length = 368

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  GSRPPGLLGRGVSLSASWWL 137
           GSRP   L RGV   A+WWL
Sbjct: 347 GSRPRAYLSRGVVNWANWWL 366


>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 290 CDKYMNVDVVKQFMEMYKMGMLPRGETF 373
           CD++  + VVK F +M K G+ P   TF
Sbjct: 359 CDEHRWLSVVKLFTDMAKKGIAPNSWTF 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,255,192
Number of Sequences: 37544
Number of extensions: 396868
Number of successful extensions: 1288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)