Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I02
         (861 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)                      31   1.2  
SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   2.8  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   8.5  

>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
          Length = 437

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = -3

Query: 751 SFWDKXRRTPLRQS-IXTQIVVSNRDAVVFPEDRVLGGFSHLHHKGFTDDMAVNEEVGID 575
           +F+   R TP+  S I + ++    +  +    +VLGGF        T   A      +D
Sbjct: 183 AFFRSHRFTPVPDSVINSALLAGGTENALSGRQQVLGGFQTPFPGAMTPGYAT-PSADLD 241

Query: 574 LVRSGQVETLAVGSVEARGSKSVDEHASVDP 482
           L++ G+     VG    + S SV     VDP
Sbjct: 242 LIKIGEARKSLVGVKLDQASDSVTGQTVVDP 272


>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 350 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 520
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 521 A 523
           +
Sbjct: 280 S 280


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 461 TACWMRERINGGMFVYAFTAACFHR 535
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,828,658
Number of Sequences: 59808
Number of extensions: 393375
Number of successful extensions: 1128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)