Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H24
         (936 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.8  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    28   8.3  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -2

Query: 332 PPXXXXPXFPFXPXXXXXXXPPXPPXPTXKXXXPPPP 222
           PP    P  P  P       PP PP    K   PPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -2

Query: 332 PPXXXXPXFPFXPXXXXXXXPPXPPXPTXKXXXPPPP 222
           PP    P  P  P       PP PP    K   PPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -2

Query: 332 PPXXXXPXFPFXPXXXXXXXPPXPPXPTXKXXXPPPP 222
           PP    P  P  P       PP PP    K   PPPP
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -1

Query: 543 PXXXXPPXPXPPXXKKXPXFPPPXXSXLXPXXXXXPP 433
           P     P P PP     P  PPP  S + P     PP
Sbjct: 268 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 314 PXFPFXPXXXXXXXPPXPPXPTXKXXXPPPP 222
           P  P  P       PP PP P      PPPP
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPP 291


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -1

Query: 543 PXXXXPPXPXPPXXKKXPXFPPPXXSXLXPXXXXXPP 433
           P     P P PP     P  PPP  S + P     PP
Sbjct: 278 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 314 PXFPFXPXXXXXXXPPXPPXPTXKXXXPPPP 222
           P  P  P       PP PP P      PPPP
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPP 301


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 302 FXPXXXXXXXPPXPPXPTXKXXXPPPP 222
           F P       PP PP P      PPPP
Sbjct: 785 FTPPSTSSVPPPPPPLPPISSGAPPPP 811


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 302 FXPXXXXXXXPPXPPXPTXKXXXPPPP 222
           F P       PP PP P      PPPP
Sbjct: 785 FTPPSTSSVPPPPPPLPPISSGAPPPP 811


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -2

Query: 338 KXPPXXXXPXFPFXPXXXXXXXPPXPPXPTXKXXXPPPP 222
           K  P    P  P          PP PP P      PPPP
Sbjct: 64  KATPPPPPPPPPLISILQQAPPPPPPPPPPTLKAPPPPP 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,473,470
Number of Sequences: 27780
Number of extensions: 74579
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)