Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H23
         (976 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  30   2.5  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.5  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 18/62 (29%), Positives = 19/62 (30%)
 Frame = +2

Query: 683 PXXALPXXNXRPXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPXAXLXP 862
           P    P  +  P   P P   P  P   P   P   P   PP    P    P P     P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428

Query: 863 PP 868
           PP
Sbjct: 429 PP 430



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +2

Query: 716 PXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPXAXLXPPP 868
           P   P P   P  P   P   P   P   PP    P    P P     PPP
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPP 416



 Score = 29.5 bits (63), Expect = 4.3
 Identities = 19/72 (26%), Positives = 20/72 (27%)
 Frame = +2

Query: 653 GVXXXPGTXGPXXALPXXNXRPXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXL 832
           G+   P    P    P     P   P P   P      P   P   P   PP    P   
Sbjct: 360 GINMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPA 419

Query: 833 XPXPXAXLXPPP 868
            P P     PPP
Sbjct: 420 PPPPPPPPPPPP 431


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 19/67 (28%), Positives = 19/67 (28%)
 Frame = +2

Query: 668 PGTXGPXXALPXXNXRPXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPX 847
           P T  P    P  N  P   P     P  P       P   PT  PP    P    P P 
Sbjct: 349 PPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPP 408

Query: 848 AXLXPPP 868
                PP
Sbjct: 409 PPTNGPP 415


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +2

Query: 728 PXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPXAXLXPPP 868
           P     P  P   P   P+  P  +PP    P    P P A   PPP
Sbjct: 84  PPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPP--YPPPPNAPYPPPP 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,167,624
Number of Sequences: 59808
Number of extensions: 327507
Number of successful extensions: 931
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2883962642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)