Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_H23
(976 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.94
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.94
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.94
AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical ... 31 0.94
Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical pr... 29 3.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 5.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.8
AC025726-27|AAK73932.2| 383|Caenorhabditis elegans Hypothetical... 28 8.8
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.94
Identities = 24/86 (27%), Positives = 24/86 (27%)
Frame = +2
Query: 671 GTXGPXXALPXXNXRPXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPXA 850
G P LP P P P P P P P PP P P P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP---PGGLPPISGGPPPPPPPPGG 767
Query: 851 XLXPPPXXXXLXXGXXXGXXXPPXLP 928
PPP G G PP P
Sbjct: 768 CPPPPPPP---PPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.94
Identities = 24/86 (27%), Positives = 24/86 (27%)
Frame = +2
Query: 671 GTXGPXXALPXXNXRPXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPXA 850
G P LP P P P P P P P PP P P P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP---PGGLPPISGGPPPPPPPPGG 767
Query: 851 XLXPPPXXXXLXXGXXXGXXXPPXLP 928
PPP G G PP P
Sbjct: 768 CPPPPPPP---PPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.94
Identities = 24/86 (27%), Positives = 24/86 (27%)
Frame = +2
Query: 671 GTXGPXXALPXXNXRPXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPXA 850
G P LP P P P P P P P PP P P P
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP---PGGLPPISGGPPPPPPPPGG 350
Query: 851 XLXPPPXXXXLXXGXXXGXXXPPXLP 928
PPP G G PP P
Sbjct: 351 CPPPPPPP---PPGGFKGGPPPPPPP 373
>AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical
protein Y57E12B.3 protein.
Length = 684
Score = 31.5 bits (68), Expect = 0.94
Identities = 20/72 (27%), Positives = 24/72 (33%)
Frame = +2
Query: 650 WGVXXXPGTXGPXXALPXXNXRPXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXX 829
W + P P P + P P P PT PF FPT PP P
Sbjct: 208 WTLPTQPPAWSPMLDSPIKPIQNSMFPTFPTMPTLPTL-PTLAPFTFPTLPPPTTMKPLN 266
Query: 830 LXPXPXAXLXPP 865
+ P A + P
Sbjct: 267 ITIDPEALMDVP 278
>Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical
protein F19C6.2b protein.
Length = 449
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 239 EKSKHLYEEKKSEVITNCREQTDTKQQDELHGSTPINFGL 358
EK+ + E KKS+V+ N +++LH S NFG+
Sbjct: 90 EKNPLVAEAKKSDVLPNWAHSVKDFAENKLHSSESRNFGM 129
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +2
Query: 728 PXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPXAXLXPPP 868
P P P P P P P PP P P PPP
Sbjct: 31 PTPMCQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPP 77
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/70 (25%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Frame = +2
Query: 716 PXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPXA--XLXPPPXXXXLXX 889
P P P P P P P +PP P P P + PPP
Sbjct: 268 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP 327
Query: 890 GXXXGXXXPP 919
G PP
Sbjct: 328 PGMGGMPPPP 337
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/70 (25%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Frame = +2
Query: 716 PXXXPXPXXXPXXPAXXPTX*PFXFPTXFPPXXXXPXXLXPXPXA--XLXPPPXXXXLXX 889
P P P P P P P +PP P P P + PPP
Sbjct: 278 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP 337
Query: 890 GXXXGXXXPP 919
G PP
Sbjct: 338 PGMGGMPPPP 347
>AC025726-27|AAK73932.2| 383|Caenorhabditis elegans Hypothetical
protein Y71G12B.6 protein.
Length = 383
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 269 KSEVITNCREQTDTKQQDELHGSTPINFGLQGLQGTS-SGDCF 394
K ITN +E TD DE++ P + G + S GDCF
Sbjct: 256 KESTITNLQEATDKSVIDEINTINPSHLVYFGNETDSFEGDCF 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,983
Number of Sequences: 27780
Number of extensions: 251181
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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