Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H22
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    30   0.52 
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.69 
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   4.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   4.9  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   8.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   8.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   8.5  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   8.5  

>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +3

Query: 654 TVSVNVEAFTKATFNLTYEELLEYRNGVYNHAVNLQPGQLVSDFTVTIDIRESNKSRTEV 833
           T+S  +        N   + LL+Y    ++   N  P QLV  + V  DIRES  S    
Sbjct: 6   TLSTELTELGVRVQNRWLQSLLDYLAKKHSTGANTTP-QLVMQYLVASDIRESTTSEGAA 64

Query: 834 PEIRXE 851
           P I  E
Sbjct: 65  PYIVSE 70


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 708 EELLEYRNGVYNHAVNLQPGQLVSDFTVTIDIRESNKSRTEVPEI 842
           EE +E ++  +NH VNL  G      TV  +   +++ +T  PE+
Sbjct: 202 EEFVEPKDSQFNHDVNLMQGSAPGYSTVEPEDNFASEIQTNAPEV 246


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 322 NARCRYSNGGTCSTNKTDEDGCEVRDIYAI 411
           NA      GGTC   + + D C+  D Y +
Sbjct: 64  NATILVDTGGTCECTEANRDDCDKLDDYVL 93


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 412 VSHRYHGLHIHLRQFYWLNRSLRY 341
           + HRY   H  LRQFY    +LRY
Sbjct: 221 LKHRYKSQHHRLRQFYADCSNLRY 244


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 257 AATITTPETMVVSRSDDAETEATLDVD 337
           A T+T P T + S  +DAE++A L  D
Sbjct: 23  AGTVTKPVTKMSSYIEDAESDAELPQD 49


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
 Frame = +1

Query: 307 CGN*SNARCRYSNGGTCSTNKTDEDGCEVRDIYAI---RSHGYCSACAKCC 450
           CG+    +C   + GTCS   T    C   ++        +G+   C + C
Sbjct: 485 CGHRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQNGFIPTCERLC 535


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 595 YHKELVPHTSLPEHVTRTISLYP*TWR-LSPKPHSI*HTKSCWSIGTVFTIMQSICNQGN 771
           YH  L P  +LPE +   ISL+   ++ L P   SI   + C       TI +     GN
Sbjct: 392 YHGALAPIYNLPEVIPCAISLHNAEFQGLWPLQSSIDEREVCGLFNVSKTICREYIQFGN 451

Query: 772 WF 777
            F
Sbjct: 452 AF 453


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 418 HGYCSACAKCCKQISRSQ 471
           H YC +CAK  K   RSQ
Sbjct: 214 HVYCGSCAKVLKTSKRSQ 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,655
Number of Sequences: 5004
Number of extensions: 69851
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)