Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H22
         (908 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54421| Best HMM Match : HipA_C (HMM E-Value=7.5)                    35   0.10 
SB_51799| Best HMM Match : SET (HMM E-Value=0)                         33   0.42 
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      29   3.9  
SB_50049| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  

>SB_54421| Best HMM Match : HipA_C (HMM E-Value=7.5)
          Length = 248

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
 Frame = +2

Query: 494 HS-FHQRICYDS-GWKILQSVRQRKERGCSNIPDSGITRNWCRTHRCQST*LEPFHCIR- 664
           HS F  R C++    +    +RQ  + GC+    S +T  + ++ RC++T      C++ 
Sbjct: 19  HSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQSRRCKTTASAKLACLQV 78

Query: 665 -ERG-----GFHQSHIQFDIRRVVGVSERCLQSCSQ 754
             RG     G H S I     +V+G+  R L+ CSQ
Sbjct: 79  DSRGSPLRWGPHASKISDKANKVLGLLRRTLKPCSQ 114


>SB_51799| Best HMM Match : SET (HMM E-Value=0)
          Length = 503

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +2

Query: 284 MVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVISMRYAHTAIVAHVRNAANKSQ 463
           +++S SD++ETE T+D DT  EG ++    T  D +   S R + + +        N+++
Sbjct: 85  LLLSESDESETETTMD-DTRQEGEIEIFAATVTDEEKCTSSRSSDSIVCLEETAIPNENK 143

Query: 464 E 466
           +
Sbjct: 144 Q 144


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 593 GITRNWCRTHR--CQST*LEPFHCIRERGGFHQSHIQ 697
           G+ RNWCR ++  C+S  L+P  C  +   +H+ H Q
Sbjct: 500 GLRRNWCREYQGLCESYNLQPVTCDSDYTTYHE-HAQ 535


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +2

Query: 257 AATITTPETMVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVISMRYAHTAI 427
           A++ + P+    S SD ++ +++    +  +G  QP+  T+ DVK VI+M  A  A+
Sbjct: 798 ASSTSQPQKNQKSYSDPSQAQSS---PSPAQGTAQPVVKTEEDVKPVITMAPASQAV 851


>SB_50049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 693 FNLTYEELLEYRNGVYNHAVNLQPGQLVS 779
           F++  EE++ + N V+N +V+L PG+  +
Sbjct: 22  FDVDNEEMVSHENQVFNKSVDLNPGEFAN 50


>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 693 FNLTYEELLEYRNGVYNHAVNLQPGQLVS 779
           F++  EE++ + N V+N +V+L PG+  +
Sbjct: 200 FDVDNEEMVSHENQVFNKSVDLNPGEFAN 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,009,634
Number of Sequences: 59808
Number of extensions: 571834
Number of successful extensions: 1767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)