Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H22
         (908 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36550.1 68415.m04483 expressed protein                             30   2.4  
At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1) id...    29   3.2  
At3g58370.1 68416.m06506 K-Cl Co-transporter type 1 protein-rela...    29   5.6  
At5g04370.1 68418.m00429 S-adenosyl-L-methionine:carboxyl methyl...    28   7.4  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    28   7.4  
At1g20630.1 68414.m02581 catalase 1 identical to catalase 1 GI:2...    28   7.4  
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c...    28   9.8  
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c...    28   9.8  

>At2g36550.1 68415.m04483 expressed protein
          Length = 221

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +2

Query: 299 SDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVISMRYAHTAIVAHVRNAA-NKSQEANF 475
           +D  ETE +  +D ++  P +  K  K+ V S+  +   H   + + RNA  N+S +A+ 
Sbjct: 31  TDPEETELSWILDKLSLVPKKEDK--KLLVLSLNGL-LLHRLHIKNKRNAPKNRSPDASC 87

Query: 476 XVLLPEHSFHQRICYDSGWKILQS 547
              L   S  Q  C DSG+K L++
Sbjct: 88  GPNLGNISIDQEKCTDSGYKTLEN 111


>At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1)
           identical to GI:2392895
          Length = 1196

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 657 VSVNVEAFTKATFNLTYEELLEYRNGVYNHAV 752
           +S+N+ AF K    LT+ +LL+  NG +N ++
Sbjct: 857 LSINLAAFEKPLRKLTFADLLQATNGFHNDSL 888


>At3g58370.1 68416.m06506 K-Cl Co-transporter type 1 protein-related
           / KCC1 protein-related contains weak hit to Pfam profile
           PF03522: K-Cl Co-transporter type 1 (KCC1)
          Length = 219

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 254 HAATITTPETMVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVIS 403
           +A  +   E  +V   +D E    LDV   +E   QP+K  K+D    +S
Sbjct: 11  NAGYLVNGEVKIVVEINDLEVIGKLDVSEESEETNQPLKKIKLDDNDAVS 60


>At5g04370.1 68418.m00429 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 396

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 526 RVITNPLMKAVFGE*HXKVGFLRFVCSIS-HMRYNSRVSVS 407
           R ++ PL+ A FG+    + F +F C +S H+   ++ +VS
Sbjct: 342 RAVSEPLLAAHFGDAIINILFNKFACHVSQHVSCRNKTTVS 382


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 642 SNHFTVSVNVEAFTKATFNLTYEELLEYRNG 734
           S H  +S+NV  F K    LT+  LLE  NG
Sbjct: 827 SVHEPLSINVATFEKPLRKLTFAHLLEATNG 857


>At1g20630.1 68414.m02581 catalase 1 identical to catalase 1
           GI:2511725 from [Arabidopsis thaliana]
          Length = 492

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 196 VAKAAALNFIREHWSPVCGTCC 261
           + KA   ++++ HW P CG  C
Sbjct: 213 INKAGKAHYVKFHWKPTCGIKC 234


>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 427

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 VAKAAALNFIREHWSPVCG 252
           +AK+  + F++ HW P CG
Sbjct: 213 IAKSGKVLFVKFHWKPTCG 231


>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 492

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 VAKAAALNFIREHWSPVCG 252
           +AK+  + F++ HW P CG
Sbjct: 213 IAKSGKVLFVKFHWKPTCG 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,414,116
Number of Sequences: 28952
Number of extensions: 385116
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)