Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H21
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.086
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.8  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    27   2.4  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   5.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.6  
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    26   5.6  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   7.5  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   9.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.3 bits (70), Expect = 0.086
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 376 PPGPKTLVP*A*PVSCPRSSLKISLL*PAFPKSPSSLCPKVPKTLPPPICLSQVTSRGCR 197
           PP P +L P A P +  +S        P+ P  PS++ P  PK  PPP+  + V +   R
Sbjct: 165 PPIPSSLPPPAQPAAPVKSP-------PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSR 217


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 28/125 (22%), Positives = 52/125 (41%)
 Frame = -2

Query: 572 VWXXXTEXLGDHTTGRKXGVLSRSHTPEPDAXXPRSATELSI*VNSGLCIXGSPSLGVXP 393
           V+   TE L  ++        S S+ P   +    ++        +   I  S +     
Sbjct: 556 VYASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTVSSITASGTTSSTS 615

Query: 392 *LVLSPSRS*NSGAVSLTG*LPAVVIKDLSVVTSFSKESIIVVSQSAKDLASPHLFVPSD 213
            +V +P+ + N+G+++ T       +   S  T+ +  S I  SQS K+ +SP  +V S 
Sbjct: 616 EIVSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSSITGSQSLKETSSP-AYVSST 674

Query: 212 VTRVS 198
           V+  S
Sbjct: 675 VSYTS 679


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 88  IQICFISSLQLWCVLTQKFTDLLITRKITRSAGNPQGDTLVTSLGTNKWGEARSL 252
           + I  +  + LW +  +KF D+ +  ++   AGN +G  L   LGT +   A+ L
Sbjct: 199 LDISDVCGMNLWDIQNEKF-DIRLLEEV---AGNSKGPDLANKLGTVEINGAKHL 249


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 286 PKSPSSLCP-KVPKTLPPPICLSQVTS 209
           P SP    P +VP  +PPP+C   V S
Sbjct: 165 PISPDYSFPLRVPINIPPPLCTPSVVS 191


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 487  GSGVWDLDKTPXFLPVVWSPRXSVXKXQTS 576
            G  V DLD  P  LP++++P  S    QTS
Sbjct: 2027 GINVPDLDLQPVDLPIIYTPISSGQDVQTS 2056


>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 73  YNSK*IQICFISSLQLWCVLTQKFTDLL 156
           Y+ K +++  +S +  W VLTQ +TD L
Sbjct: 153 YHRKQMELQMLSFVAEWLVLTQHYTDAL 180


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 337 VSCPRSSL--KISLL*PAFPKSPSSLCPKVPKTLPPPICLSQVT 212
           ++CP   L  KISLL  +   SP+     +   LP PI +  VT
Sbjct: 259 LTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPIFVGDVT 302


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 325 RSSLKISLL*PAFPKSPSSLCPKVPKTLP 239
           R S +I L  PA   S SSL PK+   LP
Sbjct: 159 RRSWEIELAQPAALSSQSSLSPKLSSVLP 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,947
Number of Sequences: 5004
Number of extensions: 49953
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)