Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H21
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   29   4.6  
SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +3

Query: 228 QMGGGKVFGTLGHNDDGLFGKAGYNREIFNDDRGQLTGQAYG 353
           Q G G  FGT      GLFG AG N        G +TG  +G
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFG 89


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +3

Query: 180 SGQSSRRHPRDVTWDKQMGGGKVFGTLGHNDDGLFGKAGYNREIFNDDRGQLTGQAYGTR 359
           S  +S   P+  +W ++     VF       D  F + G+ R+  ++ RG+    A  T 
Sbjct: 692 SSSTSESSPKRFSWSQENSKDVVFAGPDLPADNPFNREGFGRQSMSEKRGRAAVDAKKTE 751

Query: 360 VLGPGGRQHQ 389
           V     +Q +
Sbjct: 752 VFQKREKQRR 761


>SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -2

Query: 239 SPHLFVPSDVT-----RVSP*GLPADRVIFRVIRRSVNFCVNTHQSCSEDIKQICIHFE 78
           SPH+    DVT          G    +V FRV+ RS+  C+      S ++ ++C  F+
Sbjct: 36  SPHILATEDVTPDEVVEAVNQGFLRGQVDFRVVARSILCCMRHEPDWSLEVVELCEKFK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,744,876
Number of Sequences: 59808
Number of extensions: 435281
Number of successful extensions: 880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)