Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H21
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02425.1 68417.m00328 expressed protein                             35   0.057
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    31   0.93 
At3g24540.1 68416.m03082 protein kinase family protein contains ...    29   2.8  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    29   3.7  
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa...    28   6.5  
At1g10750.1 68414.m01229 expressed protein similar to gi 3128199...    28   6.5  
At5g01790.1 68418.m00098 expressed protein                             28   8.7  

>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 19/59 (32%), Positives = 34/59 (57%)
 Frame = +3

Query: 132 NAEVYGPSDYAEDYSISGQSSRRHPRDVTWDKQMGGGKVFGTLGHNDDGLFGKAGYNRE 308
           + E++G +++A D S + ++SRR  RD   +K+  GG  FG   +  D +  ++GY  E
Sbjct: 141 SGELFGEANWASDVSEAARNSRRERRDSGGEKEASGG--FG-FANGVDPMGNESGYGSE 196


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -3

Query: 376 PPGPKTLVP*A*PVSCPRSSLKISLL*PAFPKSPS--SLCPKVPKTLPPP 233
           PP     VP   P   P      SL  PA  KSPS  SL P  PK  PPP
Sbjct: 110 PPSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSPSTPSLPPPTPKKSPPP 159


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 376 PPGPKTLVP*---A*PVSCPRSSLKISLL*PAFPKSPSSLC-PKVPKTLPPP 233
           PP P+  VP    + P   P++ + +SL  P  P+SPS+   P++    PPP
Sbjct: 42  PPPPQVFVPEPLFSEPPPPPKAPVNVSLSPPPPPRSPSTSTPPRLGNRNPPP 93


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 385 CCRPPGPKTLVP*A*PVSCPRSSLKISLL*PAFPKSPSSLCPKVPK-TLPPPI 230
           CC PP    L+P + P S P S      L P FP       P  P+  LPPP+
Sbjct: 27  CCPPPLVFPLLPLSPPPSPPPSPSSPPRLPPPFPALFPPEPPLPPRFELPPPL 79


>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 383

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 245 GLWHFGTQR*WTLWKSWLQQRDL**RP 325
           G+  +   R W  WK W  QR+L  RP
Sbjct: 284 GILSYAAVRTWNKWKQWNHQRELPQRP 310


>At1g10750.1 68414.m01229 expressed protein similar to gi 3128199
           F4I1.5 putative proteinase from Arabidopsis thaliana BAC
           gb AC004521
          Length = 467

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 320 RPRATNRSGLRHQSFRTW 373
           RPR  NR GLR +SF+ W
Sbjct: 155 RPRGHNRRGLRPKSFQLW 172


>At5g01790.1 68418.m00098 expressed protein 
          Length = 188

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 295 PAFPKSPSSLCPKVPKTLPPP 233
           P  PK PSS  P +P   PPP
Sbjct: 63  PGTPKHPSSELPTLPPLTPPP 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,739,634
Number of Sequences: 28952
Number of extensions: 295777
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)