Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H20
         (1147 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.043
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.52 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.69 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.043
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = -1

Query: 823 PPPPXPXXEXXXXXXXXXXXXGGGXGXPXPPPPPXXKXXXGXXPPPP 683
           PPPP                     G P PPPPP      G  PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.3 bits (65), Expect = 0.52
 Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
 Frame = -1

Query: 829 KXPPPPXPXXEXXXXXXXXXXXXGGGX---GXPXPPPPPXXKXXXGXXPPPP 683
           K PPPP P                      G P PPPPP         PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = -1

Query: 829 KXPPPPXPXXEXXXXXXXXXXXXGGGXGXPXPPPPPXXKXXXGXXPPPP 683
           K PPPP P               G       PPPPP      G  P PP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGN--GSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = -1

Query: 823 PPPPXPXXEXXXXXXXXXXXXGGGXGXPXPPPPPXXKXXXGXXPPP 686
           PPPP P                 G   P PPPPP      G  PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQ---GRSAP-PPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/52 (26%), Positives = 15/52 (28%)
 Frame = -3

Query: 830 KXXPPPXPXXXXXXXXXXXXXXXGGGXGXPXPPPPPXXKXXXGXXXXPPNXK 675
           K  PPP P                     P PPPPP      G    PP  +
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLP-PPPPPPRSNAAGSIPLPPQGR 358


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 748 GXPXPPPPPXXKXXXGXXPPPP 683
           G P PPPPP         PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 742 PXPPPPPXXKXXXGXXPPPP 683
           P PPPPP  +      PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 757 GGXGXPXPPPPPXXKXXXGXXPPPPTKKK 671
           GG   P PPPPP          P P   K
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAPADNK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,572
Number of Sequences: 5004
Number of extensions: 21379
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 611599874
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)