Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H19
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    31   0.16 
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           30   0.48 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.9  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    27   4.5  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   7.8  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   7.8  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    26   7.8  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 554 TTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 706
           +T  TS   PP T+   ++ T        ++T + P T  NTT T +PP T
Sbjct: 63  STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTT 113



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 566 TSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 706
           T+ + PP T+   ++       +  ++T   P T  N+T T+ PP T
Sbjct: 80  TTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTT 126



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 554 TTEFTSRSCPPRTN-ST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 706
           T+  T+ + PP T+ +T ++       +  ++TV+ P T  NTT T+ PP T
Sbjct: 88  TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTT-TVVPPTT 138



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 566 TSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCTKA 712
           T+ + PP T+   ++          ++TV+ P T  NTT T+ PP T A
Sbjct: 105 TTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTT-TVVPPTTHA 152


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 470 NHNKIAFGDSKDKTSKKVSWXVYPRVWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSST 649
           N   ++F D+K   SK  S   +P+  K+TE   ++ P    +    +T+  L +     
Sbjct: 238 NSTSLSFVDAKKPGSKWPSQYDFPKKTKSTEIPFKTLPSLNINNERELTKHKLPIVKPKL 297

Query: 650 VIAPLTPSN-TTGTLSPPCTKA 712
            + P   +  +T  L+PP  +A
Sbjct: 298 AVFPSNQATASTLQLAPPPVQA 319


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +2

Query: 491 GDSKDKTSKKVSWXVYPRVWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 670
           G + D  S   S    PR W + +FTS+S  P      S I+ +V   ++       + P
Sbjct: 671 GATADVESAANSPITPPRTWHSPDFTSKSFEPIERKLPSRIS-EVTEDSIDEDKQNEVDP 729

Query: 671 SNTTGTLSPP 700
           S +   L PP
Sbjct: 730 STSARALPPP 739


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 184 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 300
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 551 KTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 706
           +TTE T+    P T ++  S T  ++  T   T I P+ P N + ++S P T
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPT 901


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 708 FVHGGLKVPVVFEGVSGAITVDDTVI 631
           F H  +    V  G+ GAIT+DD++I
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSII 132


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 653 IAPLTPSNTTGTLSPPCTKA 712
           + PL PS+ +G LSPP  KA
Sbjct: 146 VHPLRPSHVSGPLSPPEPKA 165


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 484  NFVVVLLXDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 356
            N  VVLL D + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1281 NAHVVLLQD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +2

Query: 473 HNKIAFGDSKDKTSKKVSWXVYPRVWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTV 652
           H K +   S   +S  +S   Y     T+EF     PP  N T +  + K L    S T 
Sbjct: 88  HTKTSLNGSDTISSNFLSKYEYSNGTSTSEFIDSISPPLVNETSTISSSKKLEQNYSVTE 147

Query: 653 I 655
           +
Sbjct: 148 V 148


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 641 IRSSXEPFVLSSFRYCLSSVDMILK*TLLFSKHG 540
           I SS  P+V S   +C +  D +++  L FSK G
Sbjct: 11  IASSALPYVRSPPAWCKADADSVVEQILKFSKKG 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,895
Number of Sequences: 5004
Number of extensions: 54802
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)