Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H19
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0259 - 1996427-1998772                                           31   1.5  
08_02_0272 + 15189617-15190276,15190361-15191107                       29   3.6  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     29   6.2  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    28   8.3  
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706...    28   8.3  
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12...    28   8.3  

>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 398 IFTEQTVKLINKRDHHALKLIXQQNHNKIAFGDSK 502
           I  ++ V++ N   HHALKLI + +  +I  GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765


>08_02_0272 + 15189617-15190276,15190361-15191107
          Length = 468

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 720 HDVAFVHGGLKVPVVFEGVSGAITVDDTVIXRTFRVIELQVLFVLGGHDLEVNSVVF 550
           HD++F HG L++P         + VDDT   + F ++  + L   G +  EV + VF
Sbjct: 300 HDISFRHGALRIP--------RLAVDDTTEHKLFSLMAFEQLHGAGAN--EVTAYVF 346


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 448 GVMVPFVYELDSLLGEDHSKLDG 380
           GVM P + +L  LLGE+++KL G
Sbjct: 13  GVMKPLLSKLTKLLGEEYAKLKG 35


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 184 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMELRLPVMDKG 351
           +LY+ +++   G Y+ A+   S     + G  +KE  K L+E+    T+E+ L +   G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDG 549


>03_05_0823 -
           27970038-27970258,27970279-27970544,27970608-27970657,
           27971272-27971538,27971633-27972001,27972373-27973278
          Length = 692

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +1

Query: 226 IAKCSEYLKEKKGEVIK--EAVKRLIENGKRNTMELRLPVMDKGWKGNRQILLPH 384
           + +C+ ++  + G  ++    ++  I  G  +T+ + LPV+++ +  NR I++PH
Sbjct: 176 LEECALWMPSRSGSSLQLSHTLRHQITVG--STVSINLPVVNQVFSSNRAIIIPH 228


>02_01_0020 -
           127572-127637,127760-127819,127903-128004,128099-128194,
           128649-128756,128849-128899,129018-130118
          Length = 527

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 256 KKGEVIKEAVKRLIENGKRNTMELRLPVMDKGW 354
           KKG V++E +K L+E     T   R P+  KG+
Sbjct: 337 KKGRVLEEEIKDLVEERNSLTEHKRRPMYRKGF 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,383,919
Number of Sequences: 37544
Number of extensions: 367419
Number of successful extensions: 1093
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)