Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H19
         (856 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)           31   1.6  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               29   6.4  
SB_7758| Best HMM Match : F5_F8_type_C (HMM E-Value=7.8e-26)           29   6.4  
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)                      28   8.4  
SB_32412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
          Length = 1154

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
 Frame = +3

Query: 483  LHSVTPKTKPARKSPGKFTPVF-------GKQQ----SLLQDHVHRGQTVP 602
            LH +TP++ P R S   FTP +       GK      +LL DH+  GQ VP
Sbjct: 1075 LHHLTPRSSPLRASRTTFTPPYSPIISSKGKSYHFNITLLPDHLLSGQVVP 1125


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 792 HGXXWRPYXHQCHNT 748
           HG  W PY HQC+ T
Sbjct: 77  HGPLWSPYIHQCYIT 91


>SB_7758| Best HMM Match : F5_F8_type_C (HMM E-Value=7.8e-26)
          Length = 423

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 559 CCFPNTGVNX-PGDFLAGFVFGVTECN 482
           C  P TG++  PGDFL     G+  CN
Sbjct: 393 CIHPPTGIHRTPGDFLQEHALGMATCN 419


>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
          Length = 260

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 326 SSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 201
           S  +F++  SI  + A+L     F F    H+  AV+YS  T
Sbjct: 130 SRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171


>SB_32412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 440 HHALKLIXQQNHNKIAFGDSKDKTSKKVSWXVYPRVWKTTEFTSRSCP 583
           H    +I +  H ++A     D+T +++ W V P       FTS + P
Sbjct: 76  HGVTDVIRRITHRRVASQPFADRTKQQLRWRVIPDSLSRLPFTSSTNP 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,139,225
Number of Sequences: 59808
Number of extensions: 418310
Number of successful extensions: 1261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)