Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H19
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.60 
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    29   4.2  
U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related...    29   5.6  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    29   5.6  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    29   5.6  

>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 539 PRVWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTT 682
           P V  TT   S + PP  ++T + +T+      V ST IAP+T  +TT
Sbjct: 423 PDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 470


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 551 KTTEFTSRSCP-PRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 706
           KTT FT+   P P T ST +S T  V   + S+T     TP   T T + P T
Sbjct: 434 KTTIFTTTPVPCPTTTSTTTSATTLVPTTSSSTTTTTTTTPVPVTSTTTEPTT 486


>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 187 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 300
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 554 TTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTT 682
           TTE  S + PP  ++T + +T+      V ST IAP+T  +TT
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +2

Query: 311 GTPWNFAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIXQQNHNKIAF 490
           G   +FA Q W  D K  +K+   IQ+    TE+   + N       + + ++N N++  
Sbjct: 239 GADTHFAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVRE 298

Query: 491 GDSKDKTSKKVS 526
             SK KT    S
Sbjct: 299 ELSKGKTQHSTS 310


>U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related
           family protein 5 protein.
          Length = 961

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 694 PSMYESDVMFFVYNRXYNSVMTLMXIWPPTXT 789
           PS YE+DV+   YN   +  MT+M + P   T
Sbjct: 107 PSRYETDVLREFYNISGDPAMTIMILMPKNGT 138


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +1

Query: 205  IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKR---NTMELRLPVMD 345
            +GE++ A+ KC   +K  K E    A+++ I+NG +    T++++LP  D
Sbjct: 1107 LGEWKAALDKCDAQIKSVKAE-YDHAIEQ-IKNGVKTMSQTLDIKLPSAD 1154


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +1

Query: 205  IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKR---NTMELRLPVMD 345
            +GE++ A+ KC   +K  K E    A+++ I+NG +    T++++LP  D
Sbjct: 1107 LGEWKAALDKCDAQIKSVKAE-YDHAIEQ-IKNGVKTMSQTLDIKLPSAD 1154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,196,990
Number of Sequences: 27780
Number of extensions: 310838
Number of successful extensions: 1106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)