Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_H18
(896 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 44 1e-04
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.025
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 36 0.034
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.044
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 36 0.059
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.10
SB_16976| Best HMM Match : Collagen (HMM E-Value=4.1e-11) 35 0.10
SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.18
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 33 0.24
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 33 0.31
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 32 0.55
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 32 0.55
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.72
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 32 0.72
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 31 0.96
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 31 1.3
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 31 1.7
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 29 3.9
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_38206| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 4.7
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12) 29 6.7
SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/55 (47%), Positives = 29/55 (52%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G GDQG IGPPG P P +G K T + P PG GK GE +G PG G
Sbjct: 194 GNVGDQGPIGPPGRPGP-KG--PKDTCPRCP-PGPPGPKGKRGETGPRGRPGEPG 244
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
+G+ G+QG GPPG P + G R + P PG G G KG G G
Sbjct: 11 QGVTGEQGDAGPPG-PEGNMGPRGQPGPE--GSPGLPGERGTGGVPGPKGKQGAPG 63
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHP-RPSR-GLR----SKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTX 353
G KG +G GP G P P G+R S + L PG G+ G E+G PG
Sbjct: 226 GPKGKRGETGPRGRPGEPGADGVRGPDGSTGERGETGLDGAPGKKGEDGTKGEQGVPGAK 285
Query: 354 G 356
G
Sbjct: 286 G 286
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/56 (39%), Positives = 23/56 (41%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
RG KG+ GS G PG P S G LP PG G G G PG G
Sbjct: 869 RGKKGEAGSDGRPGFPGES-GANG--------LPGPPGLAGSPGPRGPNGEPGDPG 915
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G +GD G +GPPG ++GL ++ LP G G G G PG G
Sbjct: 69 GSRGDTGDLGPPG----AKGLPG---AQQYGLPGPLGEAGPPGSQGSPGAPGIIG 116
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/55 (38%), Positives = 23/55 (41%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G KGD G +GP G P S G+ PG G G EKG PG G
Sbjct: 122 GKKGDTGPLGPKGQP-GSPGI------------DIPGPKGMDGPPGEKGLPGVQG 163
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXP---GXXGKXGEFXEKGXPGTXG 356
G KGD G GP G+P GL + + + P P G G G +KG G G
Sbjct: 524 GRKGDSGDRGPDGNP----GLPGQKGDKGLLGPIGPPGRGGVGSQGFQGQKGFKGDPG 577
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Frame = +3
Query: 189 RGIKGDQGSI--GPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXX 362
+G KGD G G PG P G+ + P PG G G+ G PG G
Sbjct: 570 KGFKGDPGDAIPGNPGDP----GVMGFPGEPQRGEPGDPGRPGLPGQTGADGPPGMIGPR 625
Query: 363 XXXXXXXPXG 392
P G
Sbjct: 626 GPDGNNGPQG 635
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +3
Query: 204 DQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
D G GPPG P P + +P PG G+ G+ +G G G
Sbjct: 927 DAGPRGPPGEPGPPGPFGAAGLD---GMPGKPGAKGESGQPGMRGADGLSG 974
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/55 (47%), Positives = 29/55 (52%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G GDQG IGPPG P P +G K T + P PG GK GE +G PG G
Sbjct: 194 GNVGDQGPIGPPGRPGP-KG--PKDTCPRCP-PGPPGPKGKRGETGPRGRPGEPG 244
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
+G+ G+QG GPPG P + G R + P PG G G KG G G
Sbjct: 11 QGVTGEQGDAGPPG-PEGNMGPRGQPGPE--GSPGLPGERGTGGVPGPKGKQGAPG 63
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G +GD G +GPPG ++GL ++ LP G G G G PG G
Sbjct: 69 GSRGDTGDLGPPG----AKGLPG---AQQYGLPGPLGEAGPPGSQGSPGAPGIIG 116
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/55 (38%), Positives = 23/55 (41%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G KGD G +GP G P S G+ PG G G EKG PG G
Sbjct: 122 GKKGDTGPLGPKGQP-GSPGI------------DIPGPKGMDGPPGEKGLPGVQG 163
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 37.1 bits (82), Expect = 0.019
Identities = 24/67 (35%), Positives = 25/67 (37%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G KGDQG IGP G P RG K P G G G + G PG G
Sbjct: 20 GPKGDQGDIGPQG-PPGERGFSGKDGLN--GTPGKDGPEGPQGPKGDSGSPGAVGSPGPM 76
Query: 372 XXXXPXG 392
P G
Sbjct: 77 GPEGPKG 83
Score = 32.3 bits (70), Expect = 0.55
Identities = 22/68 (32%), Positives = 24/68 (35%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXX 368
+G KGD GS G G P P K PG G+ G EKG G G
Sbjct: 58 QGPKGDSGSPGAVGSPGPMGPEGPKGDKGDKGDTGAPGIDGQPGPQGEKGETGPQGEQGP 117
Query: 369 XXXXXPXG 392
P G
Sbjct: 118 KGDTGPQG 125
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/67 (28%), Positives = 22/67 (32%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G G GS GP G P K + PG G+ GE +G G G
Sbjct: 65 GSPGAVGSPGPMGPEGPKGDKGDKGDTGAPGIDGQPGPQGEKGETGPQGEQGPKGDTGPQ 124
Query: 372 XXXXPXG 392
P G
Sbjct: 125 GQPGPEG 131
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 36.7 bits (81), Expect = 0.025
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXG 311
G KGD+G +GPPGHP P G+R + R P P G
Sbjct: 256 GQKGDRGDMGPPGHPGPP-GVRGRRGKRGPPGPPGPPNGG 294
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 36.3 bits (80), Expect = 0.034
Identities = 21/62 (33%), Positives = 25/62 (40%)
Frame = +3
Query: 207 QGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXXXXXXP 386
+G IGPPG P K R++ +P PG G G KG PG G P
Sbjct: 100 RGLIGPPGPP-------GKPVIRRVGIPGLPGKRGDRGTPGAKGPPGLAGEPGEPGTQGP 152
Query: 387 XG 392
G
Sbjct: 153 RG 154
Score = 33.9 bits (74), Expect = 0.18
Identities = 25/67 (37%), Positives = 27/67 (40%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G KGDQG G PG+P + GLR PG G GE E G PG G
Sbjct: 388 GQKGDQGMPGKPGNP-GAAGLRG-----------APGARGDYGERGEPGAPGRDGAPGAQ 435
Query: 372 XXXXPXG 392
P G
Sbjct: 436 GERGPRG 442
Score = 32.7 bits (71), Expect = 0.41
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
+G +GD G +G PG PS + T + PG G G+ G G G
Sbjct: 150 QGPRGDPGDVGEPGEAGPSGRNGANGTAGPPGVRGQPGAIGSPGDAGRAGPQGPQG 205
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 35.9 bits (79), Expect = 0.044
Identities = 20/67 (29%), Positives = 25/67 (37%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
GI G++G +GP G P + LP PG G+ G G PG G
Sbjct: 1301 GIPGERGPVGPAGPPGLPGRAGQAGPKGETGLPGMPGLDGEKGSAGVPGIPGGPGGRGFK 1360
Query: 372 XXXXPXG 392
P G
Sbjct: 1361 GDQGPPG 1367
Score = 34.3 bits (75), Expect = 0.14
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXX 368
RG+ G+ G GPPG + +G + P PG G+ G E+G G G
Sbjct: 935 RGLPGEDGPRGPPG-IQGMKGAKGDAITGPTGPPGPPGLPGRPGLKGERGRDGLDGQNGL 993
Query: 369 XXXXXPXG 392
P G
Sbjct: 994 PGIPGPKG 1001
Score = 33.9 bits (74), Expect = 0.18
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHP-RPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXX 365
+G+KGD+G+ G G P S G T P PG G+ G+ EKG G G
Sbjct: 328 QGMKGDKGTKGARGPPGGGSGGSGCNGTTIFKGPPGAPGEKGEPGKQGEKGEEGRPGLPG 387
Query: 366 XXXXXXPXG 392
P G
Sbjct: 388 AQGIEGPKG 396
Score = 33.5 bits (73), Expect = 0.24
Identities = 23/67 (34%), Positives = 25/67 (37%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G KGD G +GPPG P GL + PG G GE G PG G
Sbjct: 998 GPKGDTGPVGPPGRP----GLPG-----PVGKEGPPGEDGNIGEKGYAGLPGPRGETGEK 1048
Query: 372 XXXXPXG 392
P G
Sbjct: 1049 GLDGPSG 1055
Score = 33.5 bits (73), Expect = 0.24
Identities = 21/67 (31%), Positives = 25/67 (37%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G G G GPPG P+ G++ + P PG G GE G PG G
Sbjct: 1184 GKNGINGLDGPPGPDGPA-GVQGVKGDPGVGQPGLPGPAGPKGERGVNGFPGIKGIQGVQ 1242
Query: 372 XXXXPXG 392
P G
Sbjct: 1243 GLEGPPG 1249
Score = 33.5 bits (73), Expect = 0.24
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPS-----RGLR-SKXTXRKIXLP-XXPGXXGKXGEFXEKGXPG 347
+GI+G QG GPPG P P G + SK ++ + PG G G ++G PG
Sbjct: 1236 KGIQGVQGLEGPPGPPGPPGQIGFTGAKGSKGDQGELVIERGAPGPRGNTGAKGDRGIPG 1295
Query: 348 TXGXXXXXXXXXPXG 392
G P G
Sbjct: 1296 LNGLSGIPGERGPVG 1310
Score = 32.3 bits (70), Expect = 0.55
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +3
Query: 201 GDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G G G PG P + S+ P PG G+ G + G PGT G
Sbjct: 676 GPAGEPGSPGLPGEDGAIGSRGLPGPSGEPGKPGPAGRAGLAGQDGLPGTPG 727
Score = 31.9 bits (69), Expect = 0.72
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +3
Query: 195 IKGDQGSIGPPGHP-RPS-RGLRSKX-TXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
I G G GPPG P RP +G R + + LP PG G G G PG G
Sbjct: 960 ITGPTGPPGPPGLPGRPGLKGERGRDGLDGQNGLPGIPGPKGDTGPVGPPGRPGLPG 1016
Score = 31.9 bits (69), Expect = 0.72
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHP-RPS----RGLRSKXTXRKIXLPXX-PGXXGKXGEFXEKGXPGT 350
RG KGDQG G G+P P G + + + P PG G+ G EKG PG
Sbjct: 1357 RGFKGDQGPPGLNGNPGAPGVDGPTGPKGESGIAGLDGPKGEPGLPGRDGPAGEKGSPGL 1416
Query: 351 XG 356
G
Sbjct: 1417 SG 1418
Score = 31.9 bits (69), Expect = 0.72
Identities = 22/60 (36%), Positives = 24/60 (40%)
Frame = +3
Query: 177 LCDCRGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
L RG KGD+G GP G P G R P PG G+ G KG G G
Sbjct: 1416 LSGLRGDKGDRGLPGPSG-PPGEEGARGSD-----GFPGIPGSKGERGLIGPKGIKGERG 1469
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
+G+KGD G G PG P L + T PG G G G PG G
Sbjct: 857 QGVKGDTGPSGEPGPAGPPGPLGTPGTQ---GAKGEPGPLGTPGRQGLAGPPGRDG 909
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = +3
Query: 189 RGIKGDQ--GSIGPPGHPR-PSR-GLRSKXTXRKIX-LPXXPGXXGKXGEFXEKGXPGTX 353
+G KGD G GPPG P P R GL+ + + PG G G+ G PG
Sbjct: 953 KGAKGDAITGPTGPPGPPGLPGRPGLKGERGRDGLDGQNGLPGIPGPKGDTGPVGPPGRP 1012
Query: 354 GXXXXXXXXXPXG 392
G P G
Sbjct: 1013 GLPGPVGKEGPPG 1025
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/67 (32%), Positives = 24/67 (35%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G+ G G G G P S GLR R LP G G+ G G PG G
Sbjct: 1400 GLPGRDGPAGEKGSPGLS-GLRGDKGDR--GLPGPSGPPGEEGARGSDGFPGIPGSKGER 1456
Query: 372 XXXXPXG 392
P G
Sbjct: 1457 GLIGPKG 1463
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKG 338
RG+ G G G PG P GL + LP PG G+ G EKG
Sbjct: 696 RGLPGPSGEPGKPG-PAGRAGLAGQD-----GLPGTPGTKGEPGPTGEKG 739
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGT 350
+G+ G G G PG P P G R + PG G GE G PGT
Sbjct: 1048 KGLDGPSGPPGTPGQPGPP-GPRGPEGRQ-----GFPGFKGNQGEKGRMGPPGT 1095
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPR--PSRGLRSKXTXRKIX-LPXXPGXXGKXGEFXEKGXPGTXGXX 362
G KG+ GS+G G RGL L PG G+ G KG PG G
Sbjct: 1127 GTKGEPGSLGEKGDAGIPGQRGLTGNPGLPGAQGLKGEPGRDGQNGSPGRKGEPGPAGKN 1186
Query: 363 XXXXXXXPXG 392
P G
Sbjct: 1187 GINGLDGPPG 1196
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/67 (31%), Positives = 24/67 (35%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G G G GP G P S G++ + P PG G GE KG G G
Sbjct: 814 GRDGIDGVRGPKGEPG-SDGMKGEAGVGIDGPPGPPGPPGVTGEQGVKGDTGPSGEPGPA 872
Query: 372 XXXXPXG 392
P G
Sbjct: 873 GPPGPLG 879
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G G QG GPPG G++ R PG G G+ +G PG G
Sbjct: 894 GTPGRQGLAGPPGRD----GMKGDPGPR--GRDGLPGEPGARGDIGSRGLPGEDG 942
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G KG+QG GPPG + + P PG G G KG G G
Sbjct: 531 GTKGNQGIAGPPGQIGDPGKMGPQGFKGDPGPPGPPGEVGVPGAPGMKGPIGKPG 585
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSR--GLRS-------KXTXRKIXLPXXPGXXGKXGEFXEKGX 341
+G +G++G +GPPG P G + + + + PG G+ G EKG
Sbjct: 1081 KGNQGEKGRMGPPGTSEPGNVPGPKGDPGPAGPRGPAGRNGIDGLPGTKGEPGSLGEKGD 1140
Query: 342 PGTXG 356
G G
Sbjct: 1141 AGIPG 1145
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 35.5 bits (78), Expect = 0.059
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +3
Query: 192 GIKGDQGSIGPPG--HPRPSRGLR-SKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXX 362
G GDQG+ GP G PR G++ +K P G G+ G KG GT G
Sbjct: 594 GKNGDQGASGPTGPVGPRGPGGIKGAKGVMGSSGRPGITGTLGQRGRLGSKGGEGTPGSQ 653
Query: 363 XXXXXXXPXG 392
P G
Sbjct: 654 GMPGMSGPPG 663
Score = 33.5 bits (73), Expect = 0.24
Identities = 21/55 (38%), Positives = 24/55 (43%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G G +G GPPG + RG R LP PG GK G +G PG G
Sbjct: 156 GQTGPRGPTGPPGL-QGVRGAPGNEGAR--GLPGNPGLKGKRGATGSRGSPGNQG 207
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
+G +G++G +GPPG S L PG G GE E G PGT G
Sbjct: 542 KGSRGERGRVGPPGIDGKDGAPGSDG------LNGPPGPQGPAGEKGEAGQPGTNG 591
Score = 31.1 bits (67), Expect = 1.3
Identities = 21/67 (31%), Positives = 26/67 (38%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G +G G+ G PG P ++ T RK P PG G G +G PG G
Sbjct: 498 GDRGSNGADGTPGEP------GAQGTKRK---PGTPGRQGMPGASGRRGAPGAKGSRGER 548
Query: 372 XXXXPXG 392
P G
Sbjct: 549 GRVGPPG 555
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G+ G G GPPG P P + + + PG G+ G G PG G
Sbjct: 657 GMSGPPGRPGPPGPPGPPGPSGPSGSNGRNGVKGTPGRDGEPGIPGPDGRPGERG 711
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = +3
Query: 192 GIKGDQGSIGP---PGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
GIKG G+ GP PG P P + ++ LP G G G G G G
Sbjct: 84 GIKGSNGAPGPRGSPGLPGPRGSDGPRGQRGEVGLPGESGSAGMVGRPGRPGFDGAPG 141
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
+G +G GS G PG+ P + + + + PG G G+ G PG G
Sbjct: 191 KGKRGATGSRGSPGNQGPQGPSGPQGSKGQAGIDGRPGEPGLPGDKGAMGGPGPAG 246
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRP--SRGLR-SKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXX 362
G+ G G+ G PG P +G + + T LP G G GE G PG G
Sbjct: 420 GVAGKNGNAGEPGERGPVGPQGPQGAPGTQGPPGLPGKTGESGPRGERGTDGKPGAMGER 479
Query: 363 XXXXXXXPXG 392
P G
Sbjct: 480 GPQGETGPTG 489
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G+KG G G PG P P + +I G G+ G E+G PG G
Sbjct: 687 GVKGTPGRDGEPGIPGPDGRPGERGPGGEI------GRKGEKGPSGERGYPGKDG 735
>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 34.7 bits (76), Expect = 0.10
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 195 IKGDQGSIGPPG--HPRPSRGLRSKXTXRKI-XLPXXPGXXGKXGEFXEKGXPGTXG 356
+KGD G GPPG R RG++ + R + +P G G+ G EKG G G
Sbjct: 165 LKGDPGPPGPPGIMGRRGPRGIQGRKGNRGVQGIPGSHGIPGRIGIKGEKGKTGRKG 221
>SB_16976| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
Length = 111
Score = 34.7 bits (76), Expect = 0.10
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 195 IKGDQGSIGPPG--HPRPSRGLRSKXTXRKI-XLPXXPGXXGKXGEFXEKGXPGTXG 356
+KGD G GPPG R RG++ + R + +P G G+ G EKG G G
Sbjct: 43 LKGDPGPPGPPGIMGRRGPRGIQGRKGNRGVQGIPGSHGIPGRIGIKGEKGKTGRKG 99
>SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 33.9 bits (74), Expect = 0.18
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHP---------RPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXP 344
G+ GD+G +GPPGHP P+ L +K ++ L G G G G P
Sbjct: 47 GLPGDKGPVGPPGHPGHKGPTGESGPTGALGAKGQKGRMGLKGDAGYDGVDGFKGLPGPP 106
Query: 345 GTXG 356
G G
Sbjct: 107 GFQG 110
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +3
Query: 177 LCDCRGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
L RG GD+G GPPG S G++ K + + G GK G +KG G G
Sbjct: 3 LMGSRGTPGDRGPRGPPGEQGFS-GVKGK--EGRDGVKGERGSKGKSGLPGDKGPVGPPG 59
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 33.5 bits (73), Expect = 0.24
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G G+ G +GPPG P P + LP PG G G E G PG G
Sbjct: 101 GPPGELGDMGPPGPPGPPG---PQMPPGPPGLPGPPGPAGPPGTNGELGPPGDVG 152
Score = 32.7 bits (71), Expect = 0.41
Identities = 22/67 (32%), Positives = 26/67 (38%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G+ G G +GPPG P G + +P PG G G KG PGT G
Sbjct: 177 GLPGPNGPLGPPGPPG-DMGPPGLPGPQGPQMP--PGPPGLPGAPGPKGPPGTNGPLGPP 233
Query: 372 XXXXPXG 392
P G
Sbjct: 234 GDVGPPG 240
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/67 (32%), Positives = 25/67 (37%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G+ G G +GPPG P G +P PG G G KG PGT G
Sbjct: 262 GLPGPNGILGPPGPPG-DMGPPGLPGPPGPQMP--PGPPGLPGAPGPKGPPGTNGPLGPP 318
Query: 372 XXXXPXG 392
P G
Sbjct: 319 GDVGPPG 325
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/67 (31%), Positives = 24/67 (35%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G G G GPPG+P + G LP G G GE + G PG G
Sbjct: 70 GPPGPPGFQGPPGNPAGAIGPPG--------LPGPNGVNGPPGELGDMGPPGPPGPPGPQ 121
Query: 372 XXXXPXG 392
P G
Sbjct: 122 MPPGPPG 128
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/71 (29%), Positives = 25/71 (35%)
Frame = +3
Query: 180 CDCRGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGX 359
C G G G G G+P S+G + P PG G G+ E G PG G
Sbjct: 746 CGPAGNAGGVGCQGHHGNPAGSQGPNGQ--------PGPPGINGPPGQVGEMGPPGLPGP 797
Query: 360 XXXXXXXXPXG 392
P G
Sbjct: 798 PGPASPPSPPG 808
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/71 (29%), Positives = 25/71 (35%)
Frame = +3
Query: 180 CDCRGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGX 359
C G G G G G+P S+G + P PG G G+ E G PG G
Sbjct: 831 CGPAGNAGGVGCQGNHGNPAGSQGPNGQ--------PGPPGINGPPGQVGEMGPPGLPGP 882
Query: 360 XXXXXXXXPXG 392
P G
Sbjct: 883 PGPASPPSPPG 893
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPR-PS-RGLRSKXTXRK--IXLPXXPGXXGKXGEFXEKGXPGTXGX 359
G G G +GPPG+P P +G + P PG G G + G PG G
Sbjct: 313 GPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPNGQPGPPGINGPPGPLGDVGPPGLPGP 372
Query: 360 XXXXXXXXPXG 392
P G
Sbjct: 373 PGPQMPPGPPG 383
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPR-PS-RGLRSKXTXRK--IXLPXXPGXXGKXGEFXEKGXPGTXGX 359
G G G +GPPG+P P +G + P PG G G + G PG G
Sbjct: 398 GPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPNGQPGPPGINGPPGPLGDVGPPGLPGP 457
Query: 360 XXXXXXXXPXG 392
P G
Sbjct: 458 PGPQMPPGPPG 468
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 33.1 bits (72), Expect = 0.31
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXP-GXXGKXGEFXEKGXPGTXGXXX 365
+G G QG GPPG P+ SRG+ + P P G GK G E G PG+ G
Sbjct: 711 QGPIGLQGQRGPPG-PKGSRGIAGEAGPDG---PAGPAGLDGKNGINGEDGAPGSDGAQG 766
Query: 366 XXXXXXPXG 392
P G
Sbjct: 767 NPGPQGPTG 775
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/67 (25%), Positives = 24/67 (35%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G +G +G G G P + + + P PG G G+ + G PG G
Sbjct: 805 GPQGPEGEAGANGVSGPKGEMGPEGEAGQPGPPGPPGPNGPVGQTGQPGTPGPDGAAGEP 864
Query: 372 XXXXPXG 392
P G
Sbjct: 865 GARGPRG 871
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 32.3 bits (70), Expect = 0.55
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIX-LPXXPGXXGKXGEFXEKGXPGTXG 356
+G+ GD+G G G P +G+ + + LP PG GK G+ G PG G
Sbjct: 193 QGMTGDRGKPGLVGDPG-KKGMAGRAGAMGMRGLPGPPGRRGKRGDPGSDGIPGERG 248
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGH--PRPSRGLRSKXTXR-KIXLPXXPGXXGKXGEFXEKGXPGTXGX 359
+G++GD+G G PG + RG R K + G G G+ E+G PG G
Sbjct: 46 KGMQGDRGENGLPGKLGHQGKRGRRGKPGPEGPAGVQGMEGRQGVQGKDGEEGPPGPNGA 105
Query: 360 XXXXXXXXPXG 392
P G
Sbjct: 106 PGRPGVRGPKG 116
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G GD G +G G+P P GL+ + R + G G G EKG G G
Sbjct: 2 GESGDPGRLGAIGNPGP-MGLKGRRGPR--GMRGKAGMSGPKGYSGEKGMQGDRG 53
>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 32.3 bits (70), Expect = 0.55
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G G+ G +G G P P + P PG G G EKG PG G
Sbjct: 91 GPPGEPGQVGMAGPPGPPGHVGEDGAPGAPGAPGPPGSPGAPGLPGEKGDPGLQG 145
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +3
Query: 195 IKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
+KG G GPPG P P ++ + PG G GE G PG G
Sbjct: 77 LKGLNGPPGPPGAPGP------PGEPGQVGMAGPPGPPGHVGEDGAPGAPGAPG 124
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/67 (28%), Positives = 23/67 (34%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G G G GPPGH + P PG G+ G+ +G PG G
Sbjct: 97 GQVGMAGPPGPPGHVGEDGAPGAPGAPGPPGSPGAPGLPGEKGDPGLQGAPGAAGLPGAP 156
Query: 372 XXXXPXG 392
P G
Sbjct: 157 GLPGPQG 163
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 32.3 bits (70), Expect = 0.55
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +3
Query: 195 IKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXXX 374
++G G+ GPPG P+ +G K R P PG G G+ +G PG G
Sbjct: 132 VQGPPGNQGPPG-PKGDKGRPGKRGRRGPAGP--PGQPGADGKQGIRGPPGIKGERGPKG 188
Query: 375 XXXPXG 392
P G
Sbjct: 189 DVGPRG 194
>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 32.3 bits (70), Expect = 0.55
Identities = 19/67 (28%), Positives = 23/67 (34%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXXX 371
G G +G +G PG P + + P PG G G E G PG G
Sbjct: 124 GPAGAKGGLGEPGTDGPPGDAGMQGSDGANGQPGLPGRDGVPGTVGESGPPGPAGPIGAV 183
Query: 372 XXXXPXG 392
P G
Sbjct: 184 GDSGPRG 190
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXP-GXXGKXGEFXEKGXPGTXG 356
+GI GD+G+ G G P+ G R + P G G+ GE ++G PG G
Sbjct: 284 KGITGDRGAQGKTGKQGPT-GTPGTVGLRGVTGPDGSNGQPGRQGEPGKQGLPGESG 339
>SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 31.9 bits (69), Expect = 0.72
Identities = 25/76 (32%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRP--------SRGLRS-KXTXRKIXLPXXPGXXGKXGEFXEKGXP 344
GI G G G PGHP P GL K P PG G+ G E G
Sbjct: 122 GIPGTHGKNGIPGHPGPPGPSGPPGRNGLNGIPGVSGKQGPPGPPGKRGRRGHPGEPGRN 181
Query: 345 GTXGXXXXXXXXXPXG 392
GT G P G
Sbjct: 182 GTHGSPGWRGKTGPRG 197
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 31.9 bits (69), Expect = 0.72
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +3
Query: 177 LCDCRGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
+ + +G G+ G G PG P + +K L PG G+ G G PG G
Sbjct: 192 IAEIQGPPGEPGERGEPGEPGAAGAKGAKGQPGPPGLVGEPGPEGEPGPVGPTGVPGLPG 251
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 31.5 bits (68), Expect = 0.96
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXT-XRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G +G +G GPPG P P + K P G G G KG PG G
Sbjct: 1789 GPQGPKGMPGPPGPPGPPGAIGWKGNPGNPAGPPGLDGPPGPPGPQGPKGWPGVPG 1844
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 31.5 bits (68), Expect = 0.96
Identities = 20/49 (40%), Positives = 22/49 (44%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEK 335
RGI G QGS G PG P P+ G K I G G+ G EK
Sbjct: 3524 RGINGIQGSQGVPGEPGPA-GNGEKGAIGPIGPAGTKGNKGELGSKGEK 3571
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/92 (25%), Positives = 31/92 (33%)
Frame = +3
Query: 129 SSGVNSLVSTVVCNQTLCDCRGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXX 308
S+ VN V + G+KG+ G IGPPG + + PG
Sbjct: 3438 STNVNPFTKGVKGEPGVPGFPGLKGEIGLIGPPGLAGSPGQTGAPGIPGRNGTAGPPGFP 3497
Query: 309 GKXGEFXEKGXPGTXGXXXXXXXXXPXGFXXV 404
G G E+G G G P G +
Sbjct: 3498 GLKGSPGERGLSGIDGPPGDAGPVGPRGINGI 3529
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 165 CNQTLCDCRGIKGDQGSIGPPGHPRPSRGLR-SKXTXRKIXLPXXPGXXGKXGEFXEKGX 341
C+Q + R +KG+QG GPPG +G++ K + P G G G+ KG
Sbjct: 3306 CSQQVI--RVLKGEQGPQGPPG----LKGIKGDKGFPGMVGFPGLRGKTGLPGK-PGKGK 3358
Query: 342 PGTXG 356
PG G
Sbjct: 3359 PGPTG 3363
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Frame = +3
Query: 189 RGIKGD---QGSIGPPGHPRPSRG---LRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGT 350
RG KG+ +G +GPPG P L +K + P G G+ G +G G
Sbjct: 3655 RGFKGNKGMKGEVGPPGPPERIDNQTLLAAKGDKGERGFPGNNGGKGERGAQGPRGEKGN 3714
Query: 351 XGXXXXXXXXXPXG 392
G P G
Sbjct: 3715 TGAPGSQGSTGPRG 3728
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +3
Query: 177 LCDCRGIKGDQGSIGPPGHP--RPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGT 350
L ++G G GPPG + +RG R + R P PG GK G +G PG
Sbjct: 15 LASHNNVRGPPGPAGPPGSKGEKGNRGRRGRRGPR--GPPGKPGADGKPGI---RGPPGP 69
Query: 351 XGXXXXXXXXXPXG 392
G P G
Sbjct: 70 KGDKGEKGDAGPRG 83
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGH-----PRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTX 353
RG+KG +G GP G P+ RG R R + G GK G+ KG GT
Sbjct: 432 RGLKGSRGWTGPRGKTGATGPQGLRGYRGYTGARGL-----QGKTGKTGQKGAKGARGTQ 486
Query: 354 GXXXXXXXXXPXG 392
G P G
Sbjct: 487 GVRGPRGYRGPQG 499
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 192 GIKGDQGSIGPPG--HPRPSRGLRSKXTXRKIXLPXXP-GXXGKXGEFXEKGXPGTXG 356
G++GD+G IG PG + + G + + + P G G GE KG PG G
Sbjct: 2 GLEGDRGPIGKPGVSGTKGNIGAKGRIGLQGDRGEQGPFGPKGAGGEMGSKGPPGVPG 59
>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPS----RGLRSKXTXRKIXLPXXPGXXGKXG 320
+G++GD+G GP G P PS G I LP PG G G
Sbjct: 470 QGVRGDRGPPGPAGPPGPSGRYVPGPPGPPGRTVIGLPGPPGPAGPRG 517
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/68 (27%), Positives = 23/68 (33%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXX 368
+G++G +G G PG P S K P G G G KG G G
Sbjct: 90 QGLQGKRGPEGDPGSPGGSGEAGDKGVDGPPGSPGPQGFNGARGPNGPKGDSGRPGQDGR 149
Query: 369 XXXXXPXG 392
P G
Sbjct: 150 QGPPGPPG 157
>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/69 (26%), Positives = 25/69 (36%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXGXXXX 368
RG +G++G G PG + + + P G G G + G PG G
Sbjct: 284 RGAEGNKGESGAPGLIGAEGPVGEEGGRGRPGKPGADGPEGLPGPAGDDGRPGENGAPGS 343
Query: 369 XXXXXPXGF 395
P GF
Sbjct: 344 RGNSGPAGF 352
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXL---PXXPGXXGKXGEFXEKGXPGTXG 356
G +G QG IG G P + G+ + + P PG G+ G KG PG G
Sbjct: 16 GERGQQGPIGMTGPPGLAGGVGANGPSGRGGSQGPPGPPGAPGQPGPRGIKGPPGRAG 73
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 223 LRGIPGLQGDYGANXLXGKXXYPVXPEXXEXPGNSGKKXNQXPXG 357
+ G PGL G GAN G+ P PG G + + P G
Sbjct: 26 MTGPPGLAGGVGANGPSGRGGSQGPPGPPGAPGQPGPRGIKGPPG 70
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/85 (24%), Positives = 28/85 (32%)
Frame = +3
Query: 138 VNSLVSTVVCNQTLCDCRGIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKX 317
+ S+ +V C + GD G+ GP G P+ G G
Sbjct: 193 IMSVSCIIVIMSVTCLIVIMSGDLGAAGPQGEAGPT----GATFIMAFVFQGNVGKSGSK 248
Query: 318 GEFXEKGXPGTXGXXXXXXXXXPXG 392
GE +KG PG G P G
Sbjct: 249 GESGDKGQPGKPGKPGSRGQAGPAG 273
>SB_38206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 24.2 bits (50), Expect(2) = 4.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 192 GIKGDQGSIGPPG 230
G+KGD G +GP G
Sbjct: 77 GLKGDPGPVGPKG 89
Score = 23.4 bits (48), Expect(2) = 4.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 297 PGXXGKXGEFXEKGXPGTXG 356
PG G GE ++G PG G
Sbjct: 130 PGKRGPPGEKGDQGIPGVKG 149
>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
Length = 567
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 189 RGIKGDQGSIGPPGHP--RPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPG 347
RG +G QG GP GH R ++G + R P P G G KG PG
Sbjct: 223 RGRQGPQGKRGPKGHTVYRRTQGAVGQKGDRGERGPQGP--PGPKGPIGPKGEPG 275
>SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 192 GIKGDQGSIGPPGHPRPSRGLRSKXTXRKIXLPXXPGXXGKXGEFXEKGXPGTXG 356
G G +GS GPPG P P G+ + P P G G+ +G PG G
Sbjct: 155 GTNGKEGSPGPPGAPGPP-GVNGLQGLQGERGPIGP--KGLMGDKGVQGLPGPKG 206
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,403
Number of Sequences: 59808
Number of extensions: 247967
Number of successful extensions: 1132
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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