Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H17
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   159   4e-40
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.5  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   2.7  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   4.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   8.2  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    26   8.2  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  159 bits (387), Expect = 4e-40
 Identities = 73/116 (62%), Positives = 91/116 (78%)
 Frame = +2

Query: 434 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 613
           EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +
Sbjct: 95  EVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITS 154

Query: 614 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPXDLV 781
           DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD G +F+PEILD+   DL+
Sbjct: 155 DVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLI 210



 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 23/43 (53%), Positives = 35/43 (81%)
 Frame = +1

Query: 301 VLMGXNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 429
           ++MG NTM+R+A++  +++ P LE+LLP ++GNVGFVFT  DL
Sbjct: 51  LIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADL 93



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +3

Query: 171 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGS 293
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG+
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGT 48


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 609 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 484
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 302 CSWXKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 409
           CS  KT  C++  K+  T+ +PS  CC   ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 616 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 494
           IVD  NS   +  R  + L ++G+L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 350 WTTIQPSRNCCHTSRATLASCSPA-ETSFEVRDKLLENK 463
           W  + P R    T +ATL SC  A   ++  +D+ + N+
Sbjct: 163 WQLLCPDREKVQTWQATLGSCLVANRDTYRAKDETMRNQ 201


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 443 HGPQTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSL 339
           + P T   R+N +  +P+    + S A LL RWSL
Sbjct: 195 YSPLTHGIRLNDEKLVPIAKKLNISVAQLLIRWSL 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,444
Number of Sequences: 5004
Number of extensions: 73460
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)