Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_H17
(882 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 108 5e-24
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 34 0.18
SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47) 31 1.6
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 30 2.9
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 5.0
SB_32156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 6.6
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_47561| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 108 bits (260), Expect = 5e-24
Identities = 49/73 (67%), Positives = 62/73 (84%)
Frame = +2
Query: 434 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 613
+VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIIN
Sbjct: 79 DVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIIN 138
Query: 614 DVHILKPGDKVGA 652
DVH++K +K+ A
Sbjct: 139 DVHLIKKDEKLKA 151
Score = 77.8 bits (183), Expect = 1e-14
Identities = 34/43 (79%), Positives = 39/43 (90%)
Frame = +1
Query: 301 VLMGXNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 429
VLMG NTM+RKAI+ HL+NNP LEKLLPHIKGN+GFVFT+ DL
Sbjct: 35 VLMGKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDL 77
Score = 52.8 bits (121), Expect = 4e-07
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +3
Query: 198 QLLDEYPKCFIVGADNVGSQQMQQIRISLRG 290
Q LDEYPK F+VG DNVGS+QMQ IR SLRG
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRG 31
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 319 TMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 429
T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 170 TIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 33.9 bits (74), Expect = 0.18
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -3
Query: 616 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 494
I+D NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)
Length = 715
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 306 HGXKHNDAQSHQRPPGQQSSPRE-TVATHQGQRWLRVHPRRP 428
+G A SH PP QQS+P + QGQ + + P+ P
Sbjct: 171 YGLNQESAASHPCPPSQQSAPAPGNIQEGQGQGLVELPPKGP 212
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Frame = +2
Query: 362 QPSRNCCHTSRATLASCSPAETSFEVRDKLLENKVQAPARPGAIAPLSVVIPAHN--TGL 535
QPS RA ++ P + + E ++ +PA +P S+ TGL
Sbjct: 2039 QPSPRSELEKRA-ISDYQPLTINASYHRRPSEPRIVSPAGSSLASPTSIATSVITGVTGL 2097
Query: 536 GPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 643
P S Q LS+ T + ++ D+ PG K
Sbjct: 2098 HPVTVSHHQPLSVITSLVSASVSSTTDMQNSTPGKK 2133
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 29.9 bits (64), Expect = 2.9
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = -1
Query: 753 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 580
+S + +VP+SY TRP NG+ + + A E P+L+ F+ L +I + I
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218
Query: 579 VGIERAWK-KEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSNE 427
+ AWK F R + D A+ G F+ SL + ++E
Sbjct: 219 NAFDMAWKYANTFEPYRKFYQENESLDLEAIREGEHDV-EFFATSLEKYNSE 269
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 522 WAGMTTDNGAMAPGRAGAWTLFSNSL 445
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_32156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = -3
Query: 253 EPTLSAPTMKHFGYSSKSWMILTK*LDFQVALSSLPILDSVA*GLR----*NLRTRQNAR 86
EP + + + + + ++W TK L F+ SSL A GL+ + +
Sbjct: 71 EPNVLSMFLNKYPHYKRAWTRSTKSLGFRYKFSSLNTTQQTANGLQICDIVGVLEDSSKS 130
Query: 85 LPCGTNNRXLKGSLAG 38
LPC +NN K L G
Sbjct: 131 LPCISNNAGAKCDLNG 146
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 648 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 532
P P F+ C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +2
Query: 542 EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 709
E S Q+ + P T++S G+ + V +KP + G + T ++ N+S S
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328
Query: 710 VKQVYDSGTIFAPEILDI 763
VK ++ S T+ P L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346
>SB_47561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 QQMQQIRISLRGSXYRAHGXK-HNDAQSHQRPPGQQSSPRETVATHQGQRWLRVHPRRPR 431
+ + Q ++L+G YR K + ++ RPP S +V QG++ + P+ R
Sbjct: 110 ESLGQQGLTLKGDTYRLAASKLGSSSKPWSRPPADSESESGSVTWEQGRKKIEAKPKSYR 169
>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 237 ADNVGSQQMQQIRISLRGSXY-RAHGXKHNDAQSHQRPPGQQSSPRETVATH 389
A N G QQ QQ + Y + + + D+Q +++P GQQ E T+
Sbjct: 511 APNSGQQQQQQQQQQENNQQYNQGNQQQQQDSQQNRQPGGQQQQQPEQQQTN 562
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,355,528
Number of Sequences: 59808
Number of extensions: 604509
Number of successful extensions: 1753
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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