Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H17
         (882 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   215   5e-56
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   215   5e-56
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   215   5e-56
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   215   5e-56
BT023408-1|AAY55824.1| 1585|Drosophila melanogaster AT18603p pro...    32   0.91 
AE014134-1126|AAF52412.2| 1585|Drosophila melanogaster CG31635-P...    32   0.91 
AY118783-1|AAM50643.1|  993|Drosophila melanogaster GH13756p pro...    31   2.1  
AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH0603...    31   2.1  
AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA...    31   2.1  
AY069508-1|AAL39653.1| 1099|Drosophila melanogaster LD22858p pro...    31   2.8  
AE014134-904|AAF52236.1| 1099|Drosophila melanogaster CG14030-PA...    31   2.8  
AY060753-1|AAL28301.1|  271|Drosophila melanogaster GH20409p pro...    30   4.9  
AE014134-406|AAF51257.1|  271|Drosophila melanogaster CG3557-PA ...    30   4.9  
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P...    29   8.5  

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  215 bits (526), Expect = 5e-56
 Identities = 104/115 (90%), Positives = 110/115 (95%)
 Frame = +2

Query: 434 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 613
           EVRDKLLE+KV+APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIIN
Sbjct: 97  EVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIIN 156

Query: 614 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPXDL 778
           DV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKP DL
Sbjct: 157 DVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDL 211



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)
 Frame = +3

Query: 144 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRG 290
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRG 49



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 37/44 (84%), Positives = 41/44 (93%)
 Frame = +1

Query: 298 IVLMGXNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 429
           +VLMG NTMMRKAI+ HL+NNP LEKLLPHIKGNVGFVFT+GDL
Sbjct: 52  VVLMGKNTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDL 95


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  215 bits (526), Expect = 5e-56
 Identities = 104/115 (90%), Positives = 110/115 (95%)
 Frame = +2

Query: 434 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 613
           EVRDKLLE+KV+APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIIN
Sbjct: 97  EVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIIN 156

Query: 614 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPXDL 778
           DV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKP DL
Sbjct: 157 DVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDL 211



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)
 Frame = +3

Query: 144 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRG 290
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRG 49



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 37/44 (84%), Positives = 41/44 (93%)
 Frame = +1

Query: 298 IVLMGXNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 429
           +VLMG NTMMRKAI+ HL+NNP LEKLLPHIKGNVGFVFT+GDL
Sbjct: 52  VVLMGKNTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDL 95


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  215 bits (526), Expect = 5e-56
 Identities = 104/115 (90%), Positives = 110/115 (95%)
 Frame = +2

Query: 434 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 613
           EVRDKLLE+KV+APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIIN
Sbjct: 97  EVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIIN 156

Query: 614 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPXDL 778
           DV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKP DL
Sbjct: 157 DVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDL 211



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)
 Frame = +3

Query: 144 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRG 290
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRG 49



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 37/44 (84%), Positives = 41/44 (93%)
 Frame = +1

Query: 298 IVLMGXNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 429
           +VLMG NTMMRKAI+ HL+NNP LEKLLPHIKGNVGFVFT+GDL
Sbjct: 52  VVLMGKNTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDL 95


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  215 bits (526), Expect = 5e-56
 Identities = 104/115 (90%), Positives = 110/115 (95%)
 Frame = +2

Query: 434 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 613
           EVRDKLLE+KV+APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIIN
Sbjct: 97  EVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIIN 156

Query: 614 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPXDL 778
           DV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKP DL
Sbjct: 157 DVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDL 211



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)
 Frame = +3

Query: 144 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRG 290
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRG 49



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 37/44 (84%), Positives = 41/44 (93%)
 Frame = +1

Query: 298 IVLMGXNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 429
           +VLMG NTMMRKAI+ HL+NNP LEKLLPHIKGNVGFVFT+GDL
Sbjct: 52  VVLMGKNTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDL 95


>BT023408-1|AAY55824.1| 1585|Drosophila melanogaster AT18603p
           protein.
          Length = 1585

 Score = 32.3 bits (70), Expect = 0.91
 Identities = 23/89 (25%), Positives = 37/89 (41%)
 Frame = +2

Query: 251 LATDAADPYLATWLQXSCSWXKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETS 430
           +A+   +P      Q  CS  +   C     T   T++P+ +C   +     + + A  S
Sbjct: 649 VASATMEPLSPAHQQQQCSQNERNLCDITPSTEAKTVEPNESCVQNNIINNNNNNNANNS 708

Query: 431 FEVRDKLLENKVQAPARPGAIAPLSVVIP 517
               +    N +Q P+  GA A LSVV P
Sbjct: 709 ---HNNTNNNTIQLPSEAGASAILSVVPP 734


>AE014134-1126|AAF52412.2| 1585|Drosophila melanogaster CG31635-PA
           protein.
          Length = 1585

 Score = 32.3 bits (70), Expect = 0.91
 Identities = 23/89 (25%), Positives = 37/89 (41%)
 Frame = +2

Query: 251 LATDAADPYLATWLQXSCSWXKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETS 430
           +A+   +P      Q  CS  +   C     T   T++P+ +C   +     + + A  S
Sbjct: 649 VASATMEPLSPAHQQQQCSQNERNLCDITPSTEAKTVEPNESCVQNNIINNNNNNNANNS 708

Query: 431 FEVRDKLLENKVQAPARPGAIAPLSVVIP 517
               +    N +Q P+  GA A LSVV P
Sbjct: 709 ---HNNTNNNTIQLPSEAGASAILSVVPP 734


>AY118783-1|AAM50643.1|  993|Drosophila melanogaster GH13756p protein.
          Length = 993

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 485  GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 610
            GA A L +++   +TGL PE T FF+ +  PT   K  + ++
Sbjct: 925  GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 963


>AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH06032
            protein.
          Length = 1225

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 485  GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 610
            GA A L +++   +TGL PE T FF+ +  PT   K  + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195


>AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA
            protein.
          Length = 1225

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 485  GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 610
            GA A L +++   +TGL PE T FF+ +  PT   K  + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195


>AY069508-1|AAL39653.1| 1099|Drosophila melanogaster LD22858p
           protein.
          Length = 1099

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 243 NVGSQQMQQIRISLRGSXYRAHGXK--HNDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 416
           N   QQM Q     R   Y+ +  +  H  AQ+HQ P   Q +P++ +   Q   +   +
Sbjct: 211 NYAQQQMPQSYNQHRPQPYQQNVYQQYHPQAQAHQAPQPHQPAPQQQLPPEQQVPYQTHY 270

Query: 417 PRRPR 431
             RPR
Sbjct: 271 QERPR 275


>AE014134-904|AAF52236.1| 1099|Drosophila melanogaster CG14030-PA
           protein.
          Length = 1099

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 243 NVGSQQMQQIRISLRGSXYRAHGXK--HNDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 416
           N   QQM Q     R   Y+ +  +  H  AQ+HQ P   Q +P++ +   Q   +   +
Sbjct: 211 NYAQQQMPQSYNQHRPQPYQQNVYQQYHPQAQAHQAPQPHQPAPQQQLPPEQQVPYQTHY 270

Query: 417 PRRPR 431
             RPR
Sbjct: 271 QERPR 275


>AY060753-1|AAL28301.1|  271|Drosophila melanogaster GH20409p
           protein.
          Length = 271

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 326 CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAET 427
           C+KPS T     +P+R CC + +A L  CSP +T
Sbjct: 103 CSKPS-TICCYPKPTR-CCASPKAPLVPCSPMDT 134


>AE014134-406|AAF51257.1|  271|Drosophila melanogaster CG3557-PA
           protein.
          Length = 271

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 326 CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAET 427
           C+KPS T     +P+R CC + +A L  CSP +T
Sbjct: 103 CSKPS-TICCYPKPTR-CCASPKAPLVPCSPMDT 134


>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
           isoform A protein.
          Length = 1788

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 726 SYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPF 589
           +Y+C T   Y +  M + LR +  E P++ PG  + TSL  S   F
Sbjct: 824 AYSCDTEGYYTSFHMDSGLRTLKEEEPSVMPGTPLQTSLHTSSYSF 869


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,398,626
Number of Sequences: 53049
Number of extensions: 883480
Number of successful extensions: 3305
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3303
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)