Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H17
         (882 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   146   2e-35
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   146   2e-35
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      145   3e-35
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    33   0.19 
At4g16700.1 68417.m02523 phosphatidylserine decarboxylase simila...    31   1.3  
At3g56700.1 68416.m06307 male sterility protein, putative simila...    29   3.1  
At4g02405.1 68417.m00325 expressed protein                             29   4.1  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    28   9.5  
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta...    28   9.5  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       28   9.5  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  146 bits (354), Expect = 2e-35
 Identities = 68/116 (58%), Positives = 89/116 (76%)
 Frame = +2

Query: 434 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 613
           EV +++ + KV APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII 
Sbjct: 99  EVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158

Query: 614 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPXDLV 781
            V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD+    LV
Sbjct: 159 PVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLV 214



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 24/46 (52%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
 Frame = +1

Query: 298 IVLMGXNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDL 429
           +VLMG NTMM+++++ H +N  N A+  LLP ++GNVG +FT+GDL
Sbjct: 52  VVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDL 97



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 25/49 (51%), Positives = 31/49 (63%)
 Frame = +3

Query: 144 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRG 290
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRG 49


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  146 bits (354), Expect = 2e-35
 Identities = 68/116 (58%), Positives = 89/116 (76%)
 Frame = +2

Query: 434 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 613
           EV +++ + KV APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII 
Sbjct: 99  EVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158

Query: 614 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPXDLV 781
            V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD+    LV
Sbjct: 159 PVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLV 214



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 24/46 (52%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
 Frame = +1

Query: 298 IVLMGXNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDL 429
           +VLMG NTMM+++++ H +N  N A+  LLP ++GNVG +FT+GDL
Sbjct: 52  VVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDL 97



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 25/49 (51%), Positives = 31/49 (63%)
 Frame = +3

Query: 144 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRG 290
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRG 49


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  145 bits (352), Expect = 3e-35
 Identities = 68/116 (58%), Positives = 89/116 (76%)
 Frame = +2

Query: 434 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 613
           EV +++ + KV APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII 
Sbjct: 100 EVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 159

Query: 614 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPXDLV 781
            V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F PE+L++   DLV
Sbjct: 160 PVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLV 215



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
 Frame = +1

Query: 298 IVLMGXNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDL 429
           +VLMG NTMM+++++ H D   N A   LLP ++GNVG +FT+GDL
Sbjct: 53  VVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDL 98



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = +3

Query: 159 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRG 290
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LRG
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRG 50


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = +2

Query: 542 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 706
           E     + L +P +++KGT+E++ D  + + G ++    A +L +L +   ++ L
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203


>At4g16700.1 68417.m02523 phosphatidylserine decarboxylase similar
           to SP|P27465 Phosphatidylserine decarboxylase proenzyme
           (EC 4.1.1.65 {Cricetulus griseus}; contains Pfam profile
           PF02666: phosphatidylserine decarboxylase
          Length = 453

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 282 LRGSXYRAHGXKHNDAQSHQRPPGQQSSPRETVATHQGQRWLRVHPRRPRLR 437
           ++G  Y       N++     P G+  S  E V     + WLRV    P+LR
Sbjct: 218 VKGHSYSVPALLGNNSLLPMEPEGKNESKEEAVGDKSDKSWLRVSLASPKLR 269


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 365 PSRNCCHTSRATLASCSPAETSFEVRDKLLENKVQ 469
           P R   HT+R    SC   ETSFE    L+  K +
Sbjct: 33  PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67


>At4g02405.1 68417.m00325 expressed protein
          Length = 333

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 9/154 (5%)
 Frame = -1

Query: 765 LMSRISGAKIVPESYTCLTTRPYE-NGEMFNMLRRVASEA-------PTLSPGFKMCTSL 610
           +  RI G K V      + TRPY  N     M+  V+ E             G ++  S 
Sbjct: 125 IAKRIDGLKQVVLFTDGMDTRPYRLNWPTSTMIFDVSPEKVFEIASEKLQGVGARIPKSC 184

Query: 609 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSN 430
           +   +P E    IE+  + + FSG RP +WA      G     ++G   + S   S   N
Sbjct: 185 LFFHIPVEF-ENIEQRLRSKGFSGNRPSIWA----MQGLPLESQSGFEAILSAISSLAMN 239

Query: 429 E-VSAGEHEANVALDVWQQFLEGWIVVQVVFDGF 331
           E    GE   N+ L   Q  L  W+    + +GF
Sbjct: 240 ECYLIGELPTNITL---QSDLSKWMEKLFMSNGF 270


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 750 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEILVGI 571
           +G+   PE+Y+ +   PYE  E   + R  +++ P  +P +     L+ +    EI  G 
Sbjct: 371 NGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGD 427

Query: 570 E 568
           E
Sbjct: 428 E 428


>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
           putative similar to zinc finger and C2 domain protein
           GI:9957238 from [Arabidopsis thaliana]
          Length = 336

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 674 MLNISPFSYGLVVKQVYDSGTIFAPEILDIKPXDLVP 784
           ML++ P SYG V  QVYD  T  A +I+     D+ P
Sbjct: 231 MLSV-PESYGPVKLQVYDYDTFSADDIMGEADIDIQP 266


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 491 WHQDELELGLCSPTVCHGPQTRSPRVN 411
           WHQ+  ++G+C  T+C     + P ++
Sbjct: 225 WHQNIQDIGVCEDTICSDDDFQIPDID 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,972,514
Number of Sequences: 28952
Number of extensions: 415862
Number of successful extensions: 1096
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)