Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H16
         (946 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    72   2e-11
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    68   3e-10
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    67   7e-10
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    63   1e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    56   2e-06
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    48   5e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    42   0.023
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    40   0.070
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.28 
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    38   0.37 
UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer ariet...    33   8.0  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 71.7 bits (168), Expect = 2e-11
 Identities = 36/49 (73%), Positives = 37/49 (75%)
 Frame = +2

Query: 521 SKRPGTVKRPXCWRFSIGSXPLTSITKIXAQVRGGEXRQDYKDTRRFPL 667
           SK+  T       RFSIGS PLTSITKI AQVRGGE RQDYKDTRRFPL
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL 50



 Score = 33.9 bits (74), Expect = 6.1
 Identities = 18/37 (48%), Positives = 19/37 (51%)
 Frame = +3

Query: 663 PWXAPSCALLXRXXRLXDXCSAFLPXGKXWXFXIXXA 773
           P  APSCALL R  RL D C  F    + W F I  A
Sbjct: 49  PLEAPSCALLFRPCRLPDTCPPF-SLREAWRFLIAHA 84


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 68.1 bits (159), Expect = 3e-10
 Identities = 40/60 (66%), Positives = 41/60 (68%)
 Frame = -2

Query: 594 MLVRGXEPMEKRQQXGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAAAERP 415
           MLVRG EPMEKR +  L  V   LL  CS  L    PLILWITVLPPLSEL PLAA ERP
Sbjct: 1   MLVRGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 66.9 bits (156), Expect = 7e-10
 Identities = 32/43 (74%), Positives = 34/43 (79%)
 Frame = +2

Query: 539 VKRPXCWRFSIGSXPLTSITKIXAQVRGGEXRQDYKDTRRFPL 667
           V+ P   RFSIGS PLTSITK  AQ+ GGE RQDYKDTRRFPL
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPL 86


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 62.9 bits (146), Expect = 1e-08
 Identities = 30/41 (73%), Positives = 31/41 (75%)
 Frame = +2

Query: 545 RPXCWRFSIGSXPLTSITKIXAQVRGGEXRQDYKDTRRFPL 667
           RP   RFSIGS PLTSI K  AQ+ GGE RQDYKD RRFPL
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPL 118



 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +1

Query: 352 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 450
           R   +C  G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 55.6 bits (128), Expect = 2e-06
 Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +1

Query: 328 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQG 486
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 47.6 bits (108), Expect = 5e-04
 Identities = 22/35 (62%), Positives = 25/35 (71%)
 Frame = -1

Query: 757 KXHXFPKGRKAEQXSXXRQXRNRRAHEGAXQGETP 653
           K   FPKG+KAEQ S  RQ RNRRAHEGA   ++P
Sbjct: 52  KAPRFPKGKKAEQVSGKRQGRNRRAHEGAAGEKSP 86


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 41.9 bits (94), Expect = 0.023
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 130 DXDMIRYIDEFGQTTTRMQ 186
           D DMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.3 bits (90), Expect = 0.070
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +2

Query: 254 INKLTTTIAFILCFRFRXEVWEVFSVLMNRPTRGERRFAYW 376
           +++LT      L  RF      V + LMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 38.3 bits (85), Expect = 0.28
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -3

Query: 398 ERGSGRAPNTQTASPRALADSLIQ 327
           +R +  APNTQTASPRALADSL+Q
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 37.9 bits (84), Expect = 0.37
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +2

Query: 488 ITQERTCEQKASKRPGTVKRPXCWRFSIGSXPLTSITKIXAQVRGGEXRQDYKDTRRFPL 667
           I  +R   + + + P T        F   S PLT+ITKI  Q +  + + +YK T  FPL
Sbjct: 44  IMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPL 103

Query: 668 XS 673
            S
Sbjct: 104 QS 105


>UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer
           arietinum|Rep: Reverse transcriptase - Cicer arietinum
           (Chickpea) (Garbanzo)
          Length = 37

 Score = 33.5 bits (73), Expect = 8.0
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 461 NTVIHRIRGITQERTCE 511
           NTVIH  +GITQERTCE
Sbjct: 21  NTVIHXNQGITQERTCE 37


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,374,969
Number of Sequences: 1657284
Number of extensions: 10730808
Number of successful extensions: 23942
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23934
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86957532651
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)