Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H16
         (946 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    30   2.6  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.5  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.9  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.9  
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    29   5.9  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    29   5.9  

>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 498 SCVIPLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NTE 325
           S  IP+ L IT++PP +     + A++P              + N+L P+  R I    E
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKP-------THTDELNFMNKLPPKRRRTIPSEAE 312

Query: 324 KTSHTSXLNLKHKM 283
           K +HT  LN  +K+
Sbjct: 313 KPTHTDELNFMNKL 326


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 577 RPPDEHHKNRXSSQRW 624
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 385  PLPRSLTRCARSFGCGERYQLTQRR 459
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 385  PLPRSLTRCARSFGCGERYQLTQRR 459
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 531  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 433
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 531  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 433
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,175
Number of Sequences: 28952
Number of extensions: 234273
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)