Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H14
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)             29   3.7  
SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)            29   6.5  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)                   29   6.5  
SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)                     28   8.6  

>SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 399 RPCRLLKFFSLCRSCGRIYPC 337
           R CR++ F   C SC  +YPC
Sbjct: 194 RACRVVTFTLACLSCSGVYPC 214


>SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 591 EGTKKIKVNEAEHAEQIALDWDDXLY 668
           E TKK+KV    H EQI  D DD  Y
Sbjct: 340 EDTKKVKVKLELHEEQIFFDADDEAY 365


>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
          Length = 622

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 297 ILWF*NQRFRWCCRGLSCYYSRWSYSVDW*XHVCW 193
           ++W  +  + +  R L  YY RW Y V W  HV W
Sbjct: 109 VIWLYDVSWLYHVRWL--YYVRWLYHVRWLYHVSW 141



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 297 ILWF*NQRFRWCCRGLSCYYSRWSYSVDW*XHVCW 193
           + W  + R+ +  R L  Y+ RW Y V W  HV W
Sbjct: 115 VSWLYHVRWLYYVRWL--YHVRWLYHVSWLYHVRW 147


>SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)
          Length = 493

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 285 KTTILILRYVTTGDKKEYKGIYAHKNGKVKKILAGGRAFSDWFSKSR 425
           +TTI +LR   T D     G+  HK  K+KKI++   + SD  S+S+
Sbjct: 110 ETTIALLR---TSDVAISVGLVQHKKKKIKKIVSYDESDSDGKSESQ 153


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 270 RWCCRGLSCYYSRWSYSVDW*XHVCW 193
           RW       Y+ RW Y V W  HV W
Sbjct: 25  RWLYHVRWLYHVRWLYHVSWLYHVRW 50



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 270 RWCCRGLSCYYSRWSYSVDW*XHVCW 193
           RW       Y+ RW Y V W  HV W
Sbjct: 37  RWLYHVSWLYHVRWLYHVRWLCHVSW 62


>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
          Length = 531

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +2

Query: 461 RHRNREA*EVRQSE*QHHGDCKRXPHRRPVHSDGRPRRLQGHRGRHQEDQGQR 619
           R R+RE    R  +     D  R P R   + DGRPR     R R Q D   R
Sbjct: 236 RERDREVERARDQKDVRARD--RDPERSRDYRDGRPRNRSPERQRDQRDARPR 286


>SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 252 VPD-NTTGIFDSKTTILILRYVTTGDKKEYKGIYAHKNGKVKKIL 383
           VPD N TG  D   T++ L+    G ++E K     + GK+ KIL
Sbjct: 682 VPDHNVTGSDDGSATLVNLKLENAGLRRELKESKISEAGKMCKIL 726


>SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)
          Length = 148

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 506 QHHGDCKRXPHRRPVHSDGRPRRLQGHRGRHQEDQG 613
           QHH   +   H    ++  R R L+ HR  H+E+ G
Sbjct: 9   QHHHQDQALQHHHKANTTLRSRDLEKHRHHHKENPG 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,636,989
Number of Sequences: 59808
Number of extensions: 432942
Number of successful extensions: 1285
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)