Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H14
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   6.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -3

Query: 382 KIFFTLPFLWAY-IPL 338
           K+F T  F+WAY IPL
Sbjct: 218 KVFVTCIFIWAYVIPL 233


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -3

Query: 382 KIFFTLPFLWAY-IPL 338
           K+F T  F+WAY IPL
Sbjct: 218 KVFVTCIFIWAYVIPL 233


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 435 GHKDGIYVYDTETEKLEKYGNLSDS 509
           GH    Y++D +   LE +G + DS
Sbjct: 368 GHVAISYIHDPDHRYLESFGVMGDS 392


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 104 PAAWKRF*ATEHDRRXXAKYVR 39
           P  W    ATEHDR    + +R
Sbjct: 473 PVIWSNDLATEHDRSVMIQAIR 494


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 279 QRFRWCCRGLSCYYS 235
           Q   +C R  SCYYS
Sbjct: 6   QECPYCRRNFSCYYS 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,659
Number of Sequences: 438
Number of extensions: 3835
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)