Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H14
         (870 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50940.1 68416.m05577 AAA-type ATPase family protein contains...    32   0.43 
At1g21600.1 68414.m02700 expressed protein similar to hypothetic...    30   2.3  
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains...    28   9.3  

>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 451

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +3

Query: 549 YILTEDHVVYKVIEEGTKKIKVNEAEHAEQI 641
           Y+  +DH++++ IEE  ++I+V  AE AEQ+
Sbjct: 393 YLEIQDHILFEQIEEFIREIEVTPAEVAEQL 423


>At1g21600.1 68414.m02700 expressed protein similar to hypothetical
           protein GB:AAD41412 GI:5263310 from [Arabidopsis
           thaliana]
          Length = 328

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 450 IYVYDTETEKLEKYGNLSDSIMGIVKEXRTDDLYILTEDHVVYKVIEEGTKKIKVNEAEH 629
           IYV D++T+ + +   +  ++ G  K  R DDL ++ ++   +K+I  G +       E 
Sbjct: 244 IYVIDSKTKSITR-ARVLVTVPGGRKRDRKDDLLVIRDNGTSFKIIHVGERDDPTTVIER 302

Query: 630 AE 635
            E
Sbjct: 303 EE 304


>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 576

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 549 YILTEDHVVYKVIEEGTKKIKVNEAEHAEQI 641
           Y+  ++H ++  IEEG +  +V  AE AEQ+
Sbjct: 451 YLEIKEHRLFSKIEEGIEATEVTPAEVAEQL 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,402,191
Number of Sequences: 28952
Number of extensions: 278939
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)