Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H13
         (906 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    48   3e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    44   0.005
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    40   0.12 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.35 
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    38   0.47 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    37   0.62 

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +1

Query: 343 LMNRPXRGERRFAYWALFRFL 405
           LMNRP RGERRFAYWALFRFL
Sbjct: 27  LMNRPTRGERRFAYWALFRFL 47


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 44.0 bits (99), Expect = 0.005
 Identities = 34/98 (34%), Positives = 39/98 (39%)
 Frame = +3

Query: 363 RGEAVCVLGALPXPRSXXRXARSFGXGERYQXXQRX*XGYPXNQGIXXERXCEXKXXKRX 542
           R   +C  G +P PRS  R ARSFG GERY+             G   E   +    +  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDTRKTLSKEEI 77

Query: 543 GXVKRPXXWXFSIGSXPLXXXXKXXXXXXGGEXXXXYK 656
               RP    FSIGS PL    K      GGE    YK
Sbjct: 78  ----RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYK 111


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 39.5 bits (88), Expect = 0.12
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +3

Query: 141 DXDMIRYIDEFGQTTXRMQ 197
           D DMIRYIDEFGQTT RMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.35
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = -3

Query: 391 APNTQTASPRALADSLIQ 338
           APNTQTASPRALADSL+Q
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 37.5 bits (83), Expect = 0.47
 Identities = 20/35 (57%), Positives = 21/35 (60%)
 Frame = +3

Query: 339 CINESAXARGEAVCVLGALPXPRSXXRXARSFGXG 443
           CI + A AR EAV VL ALP  RS  R  RS G G
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 37.1 bits (82), Expect = 0.62
 Identities = 21/34 (61%), Positives = 21/34 (61%)
 Frame = +2

Query: 416 SXXSVVRXXXAVSXXSKXVIXLSXESGDXXGKXM 517
           S  SVVR   AVS  SK VI LS ESGD  GK M
Sbjct: 26  SLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,123,068
Number of Sequences: 1657284
Number of extensions: 4173253
Number of successful extensions: 6192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6192
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82391630811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)