Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H12
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   6.5  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    26   8.6  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   8.6  

>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 577 FETIPPAERRVFLSRSHTPEPVAV 506
           +ET PP+ERRV L R+   EP A+
Sbjct: 117 YETSPPSERRV-LDRTSKEEPWAL 139


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 176 KFIGSTKKDIQLADISQSDTRVTSPGTNKWEEGRSSARWAK 298
           K  G  K+D    D+   +  + + G + W E +++AR A+
Sbjct: 343 KIFGKRKQDYVSRDVFSDEDDMEATGHDVWREEQAAARAAR 383


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 188 STKKDIQLADISQSDTRVTSPGTN 259
           +T+KDI  A IS S   VTS GT+
Sbjct: 486 TTQKDINHATISNSGILVTSSGTD 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,090
Number of Sequences: 5004
Number of extensions: 63103
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)