Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H11
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   2.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   2.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   5.1  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 270 LGYLFNSEGKCVPVAEC 320
           LGYL N +  CVP ++C
Sbjct: 75  LGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 270 LGYLFNSEGKCVPVAEC 320
           LGYL N +  CVP ++C
Sbjct: 75  LGYLRNKKKVCVPRSKC 91


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +1

Query: 319 VEYDAEAISTDFD----LYFIKKVYLTITKLY 402
           V Y+ E +STD+D    LYF +  +  +  +Y
Sbjct: 417 VNYNPETVSTDYDMSDRLYFEEISFEVVMDIY 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,729
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)