Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H10
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    33   0.30 
05_03_0515 + 14930736-14932697                                         30   2.1  
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    29   3.8  
04_04_0347 + 24564589-24565296                                         29   3.8  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    29   5.0  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    29   5.0  
11_06_0296 + 22046649-22048202,22048524-22048703,22048811-220488...    29   6.6  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     28   8.7  

>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 288 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 386
           K   ++ E +VEGD Y + +H PG+  K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248


>05_03_0515 + 14930736-14932697
          Length = 653

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 87  IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSNLANEMQHLD 263
           + L +C +   V  +P  +    +W YH     + YV +S+  ++ S WSN   +   L 
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLS 367

Query: 264 NMMKE 278
           +   +
Sbjct: 368 SCFSD 372


>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 300 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 458
           I ++G++EG +  I  H+P  E  D+ V + +   +   +S   H  K  N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 84  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 185
           M  L+   LLAA SAA   +H  ++ PY HH+ P+
Sbjct: 5   MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +3

Query: 195  VRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQIS 344
            +++++L+       LA+E+Q  D+++ EL  K  S  +  R+E  + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = +3

Query: 66  VERSTXMIALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLAN 245
           V   T ++ L++C +L  ++     + G++ +     D  SP+      D ++ WS+ +N
Sbjct: 75  VSNKTVIVTLLVCVILTTIA-----FLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSN 129

Query: 246 EMQH 257
            + H
Sbjct: 130 LVSH 133


>11_06_0296 +
           22046649-22048202,22048524-22048703,22048811-22048860,
           22049443-22049564,22051007-22051119,22051227-22051436,
           22052152-22052265,22052529-22052658,22053010-22053143,
           22053997-22054077,22054181-22054267
          Length = 924

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 120 VSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPS 299
           ++ A +++ G++ W +      S       +DT SLW +L N  +H +   ++L     S
Sbjct: 376 ITDAVRFFKGNNSWSFLICPLSSRCDGRKFVDTSSLWGHLCN--KHPEGHWRKLQSVLGS 433

Query: 300 IINEGRVEGD 329
            ++E    GD
Sbjct: 434 KLSENTSVGD 443


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 531 KQPEDSKRPVAEPTETTSTNVSREEME 611
           +QP  SKRP AE T TT++   ++ +E
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLE 722


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,658,468
Number of Sequences: 37544
Number of extensions: 388966
Number of successful extensions: 1237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)