Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H10
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       33   0.23 
SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)                33   0.23 
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)                 31   1.6  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           31   1.6  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             30   2.9  
SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)            30   2.9  
SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)                   28   8.7  

>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +3

Query: 495 KDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESTCGTLTSAWRQPXR-- 668
           K   K   P ++++ E+ +RP  +PT+   T + R   E  T+     L        R  
Sbjct: 427 KKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTKKPTKPLLPEGEGEERAT 486

Query: 669 PMRSRKLXKR--PRTLSTSET 725
           P  +RK  K+  P+T +T +T
Sbjct: 487 PRPTRKPTKKIIPQTNNTMKT 507


>SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)
          Length = 552

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +3

Query: 462 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTET-TSTNVSREEMEFTTESTC 632
           DV+ +G  VY KD L+  F L  K  +DSK  RP  +PT+  +S  V  +E+     +  
Sbjct: 423 DVDGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTKVPSSPGVRSDELIDVMATIR 480

Query: 633 GTLTSAWRQPXRPMRS 680
           G +   W++  R  R+
Sbjct: 481 GKVQEDWKEMRRAFRA 496


>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 519 PLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESTCGTLTSAWRQPXRPMRSRKLXKR 698
           PL  KQ + S+ P+ +    TS N  R+    T++    T  ++      P+R+ K+  +
Sbjct: 507 PLPSKQFQTSQNPLRQTRYNTSQNPLRQTRYNTSQKPSQTNKTS----QNPLRANKVQYK 562

Query: 699 PRTLSTSETMRSXCRFHINLIQYKCE 776
           P     ++          N +QYK E
Sbjct: 563 PEPSQANKVQYKPEPSQANKVQYKPE 588


>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
          Length = 527

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/75 (30%), Positives = 31/75 (41%)
 Frame = +3

Query: 528 QKQPEDSKRPVAEPTETTSTNVSREEMEFTTESTCGTLTSAWRQPXRPMRSRKLXKRPRT 707
           +K+PE+S    A+P     TN   E  E   E     + S    P  P R  KL +R +T
Sbjct: 9   KKRPENSPPEGADPKNRIKTNPEPETHEAIYEEIWKEI-SEEHPPPLPKRGPKLKQRSKT 67

Query: 708 LSTSETMRSXCRFHI 752
           L   E  +    F I
Sbjct: 68  LDHIEIQQGFKTFTI 82


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 519  PLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESTCGTLTSAWRQPXRPMRSRKLXKR 698
            P +  QPED   P   P+   STN S +      +S    +    +      R R + ++
Sbjct: 785  PERSCQPEDVTSPDVIPSSQVSTNTSLQSSFLRKQSLSTAVNVLNKLENENSRERNILQK 844

Query: 699  PRTLSTSETMRS 734
            P T+ T+   +S
Sbjct: 845  PVTIRTTTESQS 856


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 522 LKQKQPEDSKRPVAEPTETTSTNVSRE 602
           ++Q Q + SKRP   P ETTS N+ ++
Sbjct: 182 IEQSQADRSKRPYDPPVETTSNNMRKK 208


>SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)
          Length = 347

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 522 LKQKQPEDSKRPVAEPTETTSTNVSRE 602
           ++Q Q + SKRP   P ETTS N+ ++
Sbjct: 170 IEQSQADRSKRPYDPPVETTSNNMRKK 196


>SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 151

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 462 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTE 575
           DVN +G  VY KD L+  F L  K  +DSK  RP  +PT+
Sbjct: 112 DVNGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTK 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,527,516
Number of Sequences: 59808
Number of extensions: 437187
Number of successful extensions: 1452
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)