Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H10
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    33   0.33 
At1g22060.1 68414.m02759 expressed protein                             31   1.0  
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    29   3.1  
At3g18370.1 68416.m02336 C2 domain-containing protein contains P...    29   5.4  
At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5) (A...    29   5.4  
At1g11240.1 68414.m01287 expressed protein                             28   7.2  
At5g57230.1 68418.m07150 expressed protein                             28   9.5  
At5g55540.1 68418.m06919 expressed protein                             28   9.5  
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    28   9.5  

>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
           putative ATP-dependent helicases
          Length = 1058

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
 Frame = +3

Query: 318 VEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGSWVYEK 497
           + G+   + +   G   +D+    K+      ++S F+ Y+K + L  D       + + 
Sbjct: 20  INGESTTVQVSSDG-TIRDLKKALKSCFPPASSSSNFHLYIKGEKLKLDTRVAAITINDG 78

Query: 498 DVLKITFPLKQKQPEDSKRP-VAEPTETTS-TNVSREEMEFTTESTC 632
           D+L + FP K+K+   + +P +++P+  +S T+  ++E     E  C
Sbjct: 79  DILGL-FPFKKKELRQTPKPDLSKPSSLSSRTSTMKDENAKRAEDHC 124


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 201  ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINE 311
            E MLDT   +S++  E++ + +   +LSLKF  +  E
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGE 1968


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/79 (15%), Positives = 40/79 (50%)
 Frame = +3

Query: 183 FSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGY 362
           F+P + E    T  + + L    ++++ +    ++    ++ + + + D Y++   +PG 
Sbjct: 88  FTPTLNEFFPPT--IGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGL 145

Query: 363 EQKDINVKAKNGVLMVQAN 419
            ++D+ +   +G+L ++ +
Sbjct: 146 TKEDVKITVNDGILTIKGD 164


>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 815

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 243 NEMQHLDNMMKELSLKFPSIINEGRVEG 326
           N+   L N MK++ +KF ++I++G +EG
Sbjct: 735 NKALLLSNQMKQVMIKFQNLIDDGDLEG 762


>At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5)
           (ABA3) identical to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262;
           supporting cDNA gi|15407261|gb|AY034895.1|
          Length = 819

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 589 FVEVVSVGSATGLLLSSGCFCFSGKVIFNTSFS*TQLPSEFTSQGRFC 446
           ++EV  + S +G+ L +GCFC  G        S ++L S     G  C
Sbjct: 410 YLEVEKLASLSGIQLRTGCFCNPGACAKYLELSHSELRSN-VEAGHIC 456


>At1g11240.1 68414.m01287 expressed protein
          Length = 200

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = +3

Query: 579 TSTNVSREEME----FTTEST-CGTLTSAWRQPXRPMRSRKLXKRPRTLSTSETMR 731
           T++ +SREE E      T+ST  G+   A  +   P+R  K  K+ R  ST++TM+
Sbjct: 130 TTSEISREEEEPIRKEKTQSTESGSTAKASTKQPVPVRKTKPMKQSRRRSTTKTMK 185


>At5g57230.1 68418.m07150 expressed protein 
          Length = 160

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 240 ANEMQHLDNMMKELSLKFPSIINEGRVEGDKY 335
           +N  QHLD M++E + +F   I   RVE  KY
Sbjct: 60  SNYTQHLDRMLEEAAAEFYPNIKFMRVECPKY 91


>At5g55540.1 68418.m06919 expressed protein
          Length = 1380

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 261 DNMMKELSLKFPSIINEGRVEGDKYQISIH 350
           D    + SL  PSI+ EGR +  K+QI+ H
Sbjct: 866 DPSSPDSSLLVPSILEEGRGKTQKWQINTH 895


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 293 PQHYKRRTR-GRRQVSDIYSPAWLRTERHQRESEKWSADGA 412
           PQ Y+   R GR+   ++    W+ T+  +  S+ W +D A
Sbjct: 140 PQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAA 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,926
Number of Sequences: 28952
Number of extensions: 301030
Number of successful extensions: 1012
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)