Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H09
         (1227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    40   7e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.57 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    28   3.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   3.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   4.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 36/168 (21%), Positives = 46/168 (27%), Gaps = 2/168 (1%)
 Frame = +2

Query: 278 PPPAXPXXXXXPRXPPRPXXXXXPXXXXRXPPRXXXXPXPPGXAXXXXXXXXXRPHPXXA 457
           PPP+       P  PPRP              +    P     +         RP P   
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP--- 313

Query: 458 XPXPTXXHNAXRXXXXXXAHXTXX--PXPAPRHXGHRGXXTPPTXXXRXPXPXPHNARXP 631
            P P    N  +      +  +    P P PR         PP      P P P +A  P
Sbjct: 314 -PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA--P 370

Query: 632 XKGXRQXPXPXPEARAXPXXPXXXXPAXRRPRPPXPXXXTAXHRAPXP 775
             G +  P     A + P  P    P    P  P     +     P P
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 1098 PPPXPXXPPAPPXXERXPXXXARXDXXRSPTXEPPAXPXXPAP 1226
            PPP P  P + P   R P   +      +P   PPA P   AP
Sbjct: 361  PPPPP--PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = +3

Query: 1068 PXPXXXXPRGPPPXPXXPPAPPXXERXPXXXARXDXXRSPTXEPPAXPXXPAP 1226
            P P    P  P P    PP PP  E  P    +      P   P   P  P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPP--VPKPSVGVPPVPPPSTAPPVPTP 1222



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
 Frame = +2

Query: 578  PTXXXRXPXPXPHNARXPXKGXRQX--PXPXPEARAXPXXPXXXXPAXRRPR---PPXPX 742
            P      P P P  A  P         P P P A   P  P    P   +P    PP P 
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212

Query: 743  XXTA 754
              TA
Sbjct: 1213 PSTA 1216


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +1

Query: 262 PXXXPXPPXXPXXXXXPQAPPPTPXXXXPPPXXP 363
           P   P PP  P     P  PPP       PP  P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = +1

Query: 856  APXAPPPXTXXQTPAXSTXXXXXXXASTAXGGRQGPQARXPPHXXAXRGNXPPPXP 1023
            +P  PPP     TPA +                 GP    PP   A  G  PPP P
Sbjct: 731  SPPPPPPAVIVPTPAPAPIPVPPPAPIMG-----GPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 1068 PXPXXXXPRGPPPXPXXPPA 1127
            P P      GPPP P  PPA
Sbjct: 765  PPPPGVAGAGPPPPPPPPPA 784


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 1092 RGPPPXPXXPPAPP 1133
            + PPP P  PPAPP
Sbjct: 804  KAPPPAPLPPPAPP 817


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = +3

Query: 1068 PXPXXXXPRGPPPXPX-XPPAPPXXERXPXXXARXDXXRSPTXEPPAXPXXPA 1223
            P      P  PPP P   PP P      P          +P   PP+ P  P+
Sbjct: 140  PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPS 192


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
            protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = -3

Query: 1219 GXXGXAGGSXVGLRSXSXRAXXXGXRSXXGGAGGXXGXGGGPRGXXXXG 1073
            G  G  GGS  G    S      G R   GG G   G  GG RG    G
Sbjct: 142  GFRGGRGGSRGGFGGNSRGGFGGGSRGGFGG-GSRGGSRGGFRGGSRGG 189


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
 Frame = +1

Query: 280  PPXXPXXXXXPQA----PPPTPXXXXPPPXXP 363
            PP  P     PQ     PPP P    PPP  P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = +1

Query: 238  TGPXAXRGPXXXPXPPXXPXXXXXPQAPPPTPXXXXPPPXXP 363
            + P     P   P PP  P     P + PP P      P  P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 262 PXXXPXPPXXPXXXXXPQAPPPTP 333
           P   P PP  P     P  PPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -3

Query: 1219 GXXGXAGGSXVGLRSXSXRAXXXGXRSXXGGA-GGXXGXGGGPRG 1088
            G  G  GG   G R    R    G R   GGA GG  G  GG  G
Sbjct: 23   GGRGGFGGGRGGARGGG-RGGARGGRGGRGGARGGRGGSSGGRGG 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.137    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,907
Number of Sequences: 5004
Number of extensions: 24734
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)